Gene detail

Detail information of GWHGAAZE032226

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG18913.1	0	bkdB [Gossypium arboreum]
COG	YP_003913633.1	6E-135	transketolase central region
Swissprot	tr\|Q9SAV3\|ODBB1_ARATH	0	2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor)
trEMBL	tr\|W9RK05\|W9RK05_9ROSA	0	2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313\|EMBL:EXB94816.1}
TAIR10	AT1G55510.1	3E-152	branched-chain alpha-keto acid decarboxylase E1 beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	73099431	73107253	+
GWHAAZE00000009	mRNA	73099431	73107253	+
GWHAAZE00000009	exon	73099431	73099580	+
GWHAAZE00000009	exon	73099888	73099923	+
GWHAAZE00000009	exon	73100147	73100204	+
GWHAAZE00000009	exon	73100308	73100405	+
GWHAAZE00000009	exon	73100948	73101037	+
GWHAAZE00000009	exon	73101136	73101204	+
GWHAAZE00000009	exon	73101287	73101373	+
GWHAAZE00000009	exon	73105949	73106044	+
GWHAAZE00000009	exon	73106131	73106208	+
GWHAAZE00000009	exon	73106853	73106939	+
GWHAAZE00000009	exon	73107218	73107253	+
GWHAAZE00000009	CDS	73099431	73099580	+
GWHAAZE00000009	CDS	73099888	73099923	+
GWHAAZE00000009	CDS	73100147	73100204	+
GWHAAZE00000009	CDS	73100308	73100405	+
GWHAAZE00000009	CDS	73100948	73101037	+
GWHAAZE00000009	CDS	73101136	73101204	+
GWHAAZE00000009	CDS	73101287	73101373	+
GWHAAZE00000009	CDS	73105949	73106044	+
GWHAAZE00000009	CDS	73106131	73106208	+
GWHAAZE00000009	CDS	73106853	73106939	+
GWHAAZE00000009	CDS	73107218	73107253	+

Transcript Sequence
>GWHTAAZE032264 GGAGTGATGCCTTTATTGATACAAGTAGAGTTTTTCAGGACATATGTATTCGGAGAAGATGTGAGTTTTGGCGGGGTCTTCCGATGCACAACAGGGTTAGTTGATCGATTTGGTAAAGATCGGGTTTTCAACACCCCTCTTTGCGAGCAGGGCATTGTTGGATTTGGTATTGGTTTGGCTGCAATGATTGTCAATGAAGCTGCCAAGTTTAGATATCGGAGCGGTAATCAATTCAACTGTGGAGGTTTAACAGTAAGAGCTCCCTATGGAGCTGTGGGCCATGGTGGGCATTATCACTCACAATCCCCTGAAGCTTTCTTCTGTCATGTCCCGGGTATCAAGGTGGTGATCCCTCGAAGTCCAAGGCAAGCTAAAGGATTGTTATTGTCATGCATACGCGATCCCAACCCTGTTGTCTTTTTTGAACCGAAGTGGCTTTACCGTTTGGCTGTAGAAGAGGTTCCAGAGCATGACTACATGTTGCCTCTGTCAGAGGCAGAGGTGATTCGAGAAGGTAGCGATATAACACTTGTTGGGTGGGGGGCTCAGCTATCGATCATGGAACAGGCTTGCATTGAAGCTGAAAAGGATGGAATCTCTTGTGAACTGATAGACCTAAAGACACTAATACCTTGGGACAAGGAAACAGTAGAAAACTCTGTTAATAAGACTAGCAGACTTCTGATTAGTCATGAAGCTCCAATAACAGGCGGATTTGGTGCTGAAATCGCTGCATCTATTGTTGAACGTTGCTTCTTGAGGTTAGAAGCTCCTGTAGCCAGGGTTTGTGGTCTGGACACTCCTTTTCCACTTGTTTTTGAACCCTTCTATATGCCCACCAAAAACAAGATAGTAGATGCAATTAAAGCAACAGTAGATTATTAG

Network for GWHGAAZE032226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02779.25	Transket_pyr	61	148	8.70E-20
PF02780.21	Transketolase_C	165	284	2.10E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00167	BCKDHB, bkdA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.968
	SRR3591706	second leaf	20.828
	SRR3591707	mature leaf	22.505
	SRR3591708	Shoot apex	28.530
	SRR3591709	Stem	31.663
	SRR3591710	White floral bud	41.069
	SRR3591711	White flower	70.915
	SRR3591712	Green floral bud	36.875
	SRR3591713	Yellow flower	79.927
SRP173429	SRR8316895	Juvenile bud stage	24.419
	SRR8316896	Juvenile bud stage	32.384
	SRR8316897	Juvenile bud stage	19.906
	SRR8316894	Third green stage	15.093
	SRR8316900	Third green stage	56.097
	SRR8316901	Third green stage	40.270
	SRR8316898	Complete white stage	24.728
	SRR8316899	Complete white stage	53.329
	SRR8316903	Complete white stage	38.096
	SRR8316902	Silver flowering stage	24.311
	SRR8316904	Silver flowering stage	35.021
	SRR8316905	Silver flowering stage	17.000
	SRR8316906	Gold flowering stage	55.471
	SRR8316907	Gold flowering stage	50.733
	SRR8316908	Gold flowering stage	48.148
SRP132670	SRR6706286	Control	56.888
	SRR6706287	Light intensity 50%	49.442
	SRR6706288	Light intensity 20%	59.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.591
	CNS0095593	Slightly white alabastrum(diploid) 2	39.098
	CNS0095594	Slightly white alabastrum(diploid) 3	35.068
	CNS0095595	Whole white alabastrum(diploid) 2	36.298
	CNS0095596	Whole white alabastrum(diploid) 3	39.216
	CNS0095597	Whole white alabastrum(diploid) 4	38.779
	CNS0095598	Silvery flower (diploied) 1	40.291
	CNS0095599	Silvery flower (diploied) 2	35.938
	CNS0095600	Silvery flower (diploied) 3	50.196
	CNS0095601	Golden flower (diploid) 1	39.144
	CNS0095602	Golden flower (diploid) 2	59.501
	CNS0095603	Golden flower (diploid) 3	54.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.493
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.623
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.396
	CNS0095610	Silvery flower (tetraploid) 1	49.938
	CNS0095611	Silvery flower (tetraploid) 2	60.407
	CNS0095612	Silvery flower (tetraploid) 3	42.971
	CNS0095613	Golden flower (tetraploid) 1	44.231
	CNS0095614	Golden flower (tetraploid) 2	47.497
	CNS0095615	Golden flower (tetraploid) 3	45.577
CRA001975	CRR073297	Stem 1	36.621
	CRR073298	Stem 2	30.583
	CRR073299	Stem 3	30.401
	CRR073300	Leaf 1	40.674
	CRR073301	Leaf 2	37.633
	CRR073302	Leaf 3	34.379
	CRR073303	Juvenile bud 1	42.157
	CRR073304	Juvenile bud 2	37.435
	CRR073305	Juvenile bud 3	40.893
	CRR073306	Third green 1	26.371
	CRR073307	Third green 2	19.067
	CRR073308	Third green 3	22.534
	CRR073309	Second white 1	27.065
	CRR073310	Second white 2	32.296
	CRR073311	Second white 3	25.887
	CRR073312	Silver flowering 1	21.457
	CRR073313	Silver flowering 2	22.789
	CRR073314	Silver flowering 3	22.604
	CRR073315	Gold flowering 1	20.891
	CRR073316	Gold flowering 2	29.075
	CRR073317	Gold flowering 3	17.589
	CRR073318	Tawny withering 1	35.394
	CRR073319	Tawny withering 2	25.360
	CRR073320	Tawny withering 3	29.166