Detail information of GWHGAAZE032242


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285750.11.7108E-172PREDICTED: uncharacterized protein LOC100253534 isoform X1 [Vitis vinifera]
COGYP_434850.18E-1062-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit beta
Swissprottr|Q9SAV3|ODBB1_ARATH2E-1532-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor)
trEMBLtr|F6GUP1|F6GUP1_VITVI6E-173Putative uncharacterized protein {ECO:0000313|EMBL:CCB43818.1}
TAIR10AT1G55510.12E-127branched-chain alpha-keto acid decarboxylase E1 beta subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7352945973544288-
GWHAAZE00000009mRNA7352945973544288-
GWHAAZE00000009exon7354423873544288-
GWHAAZE00000009exon7354395873544015-
GWHAAZE00000009exon7354375773543854-
GWHAAZE00000009exon7354312373543212-
GWHAAZE00000009exon7354295673543024-
GWHAAZE00000009exon7354278773542873-
GWHAAZE00000009exon7353812073538215-
GWHAAZE00000009exon7353795673538033-
GWHAAZE00000009exon7353723273537318-
GWHAAZE00000009exon7353303173533087-
GWHAAZE00000009exon7353281973532948-
GWHAAZE00000009exon7353252073532596-
GWHAAZE00000009exon7353170273532310-
GWHAAZE00000009exon7353122873531547-
GWHAAZE00000009exon7353093273531022-
GWHAAZE00000009exon7353062973530841-
GWHAAZE00000009exon7352945973529584-
GWHAAZE00000009CDS7354423873544288-
GWHAAZE00000009CDS7354395873544015-
GWHAAZE00000009CDS7354375773543854-
GWHAAZE00000009CDS7354312373543212-
GWHAAZE00000009CDS7354295673543024-
GWHAAZE00000009CDS7354278773542873-
GWHAAZE00000009CDS7353812073538215-
GWHAAZE00000009CDS7353795673538033-
GWHAAZE00000009CDS7353723273537318-
GWHAAZE00000009CDS7353303173533087-
GWHAAZE00000009CDS7353281973532948-
GWHAAZE00000009CDS7353252073532596-
GWHAAZE00000009CDS7353170273532310-
GWHAAZE00000009CDS7353122873531547-
GWHAAZE00000009CDS7353093273531022-
GWHAAZE00000009CDS7353062973530841-
GWHAAZE00000009CDS7352945973529584-
Transcript Sequence

Network for GWHGAAZE032242

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.25Transket_pyr161033.50E-19
PF02780.21Transketolase_C1202375.60E-33
PF04146.16YTH6377401.70E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00167BCKDHB, bkdA2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.659
SRR3591706second leaf22.569
SRR3591707mature leaf31.535
SRR3591708Shoot apex33.163
SRR3591709Stem30.740
SRR3591710White floral bud33.825
SRR3591711White flower47.890
SRR3591712Green floral bud41.456
SRR3591713Yellow flower46.706
SRP173429 SRR8316895Juvenile bud stage 30.119
SRR8316896Juvenile bud stage 40.444
SRR8316897Juvenile bud stage 19.514
SRR8316894Third green stage 21.036
SRR8316900Third green stage 58.800
SRR8316901Third green stage 59.728
SRR8316898Complete white stage 15.998
SRR8316899Complete white stage 72.795
SRR8316903Complete white stage 31.809
SRR8316902Silver flowering stage26.358
SRR8316904Silver flowering stage35.477
SRR8316905Silver flowering stage17.526
SRR8316906Gold flowering stage 55.603
SRR8316907Gold flowering stage 53.937
SRR8316908Gold flowering stage 60.207
SRP132670SRR6706286Control91.902
SRR6706287Light intensity 50%89.241
SRR6706288Light intensity 20%91.947
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.823
CNS0095593Slightly white alabastrum(diploid) 231.111
CNS0095594Slightly white alabastrum(diploid) 326.616
CNS0095595Whole white alabastrum(diploid) 229.350
CNS0095596Whole white alabastrum(diploid) 326.748
CNS0095597Whole white alabastrum(diploid) 424.242
CNS0095598Silvery flower (diploied) 142.472
CNS0095599Silvery flower (diploied) 233.888
CNS0095600Silvery flower (diploied) 378.506
CNS0095601Golden flower (diploid) 131.932
CNS0095602Golden flower (diploid) 270.149
CNS0095603Golden flower (diploid) 371.197
CNS0095604Slightly white alabastrum(tetraploid) 117.646
CNS0095605Slightly white alabastrum(tetraploid) 214.236
CNS0095606Slightly white alabastrum(tetraploid) 331.257
CNS0095607Whole white alabastrum(tetraploid) 113.300
CNS0095608Whole white alabastrum(tetraploid) 29.989
CNS0095609Whole white alabastrum(tetraploid) 326.270
CNS0095610Silvery flower (tetraploid) 136.268
CNS0095611Silvery flower (tetraploid) 233.276
CNS0095612Silvery flower (tetraploid) 317.403
CNS0095613Golden flower (tetraploid) 123.064
CNS0095614Golden flower (tetraploid) 233.572
CNS0095615Golden flower (tetraploid) 329.687
CRA001975CRR073297Stem 164.301
CRR073298Stem 260.486
CRR073299Stem 356.803
CRR073300Leaf 178.548
CRR073301Leaf 270.705
CRR073302Leaf 359.819
CRR073303Juvenile bud 170.649
CRR073304Juvenile bud 254.286
CRR073305Juvenile bud 395.882
CRR073306Third green 123.081
CRR073307Third green 219.271
CRR073308Third green 326.213
CRR073309Second white 130.351
CRR073310Second white 228.664
CRR073311Second white 326.306
CRR073312Silver flowering 117.318
CRR073313Silver flowering 222.822
CRR073314Silver flowering 317.564
CRR073315Gold flowering 130.133
CRR073316Gold flowering 242.520
CRR073317Gold flowering 346.464
CRR073318Tawny withering 141.265
CRR073319Tawny withering 232.576
CRR073320Tawny withering 339.770