Gene detail

Detail information of GWHGAAZE032245

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02934.1	9.07949E-64	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	2E-44	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|A0A068U441\|A0A068U441_COFCA	3E-64	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP02934.1}
TAIR10	AT5G57660.1	2E-28	CONSTANS-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	73650478	73652439	+
GWHAAZE00000009	mRNA	73650478	73652439	+
GWHAAZE00000009	exon	73650478	73651155	+
GWHAAZE00000009	exon	73652065	73652439	+
GWHAAZE00000009	CDS	73650478	73651155	+
GWHAAZE00000009	CDS	73652065	73652439	+

Transcript Sequence
>GWHTAAZE032283 ATGTTTTCCAGCGTGGGGAGCGGCGGCAAAGCAGTGCGATTACTGCAATACGGCAGCGGCACTGCTATTCTGCCGTATGGACAAGGCGTTCATGTGCATGGCGTGCGACGCCAGGGTCCATGGCAGCCCTGCGAGTGGGGTCCACTCGCGCCACGAGCGCTTGTGGTTGTGCGAGGTATGCGAGCATGCGCCCGCCAGCGTCACCTGCAAGGCCGACGCGGCCGCGCTCTGTGTCACGTGCGACCGCGACATCCACGCTGCAAATCCTGGCGCGTCGCCATGAGCGCGTGCCGGTTGTCCCTTTACGAGACAGCCGAGTCCGTCGTGAAGTCCACAGCCGCAGCCTTCTTTGTCCCCGTAGTTGGCGATGACTCCTCCGCCACTGCTGGCGGCGGCGACGGCGGCTGTGCACCGGAGATAAAATCGGTGGAAATGTTATTTTCTGATTCGGACCAGTTGCTGGATTTTGATTTTCCGGTACCCACCACCACGCGCCACCAATATCACCACCACGATTCAGCTTCCACTGACAGCGTTGTTCCGGTGCAACCGGTGAAGCCAATTCTACAGGCGGAAACTGTAGCTCATGCTCCGGAGGTTCGTTTCGAGATTGATTTCACCAGATCCAATTTCAATTCGTACAACAACAATTATGCAGCTCAATCTCTCAGCCAAAGCGTTTCTTCATCGTCGATGGACGTCGGAGTAGTTCCAGACGGGAACTCCACGTCGGATATATCCTACCCATTTGCACTACAACTCAACAGCACATTAATGGATCCGAATAATTCTACAACCCAAAGTCAACCTACCCAATTATCTGGACTAGATCGAGAAGCTAGGGTTATGAGGTACAGAGAAAAGCGAAAGAATAGAAAATTTGAAAAAACCATACGGTATGCTTCAAGAAAGGCCTACGCTGAGACAAGACCAAGGGTCAAGGGTCGATTTGCCAAGAGGACCGACACAGACAACGAGGCGGACCGATGGTTCATCCCTAATTCGACCGGTTATATTGGTGATTCTAAATATGGAGTCGTTCCATCATTTTAA

Network for GWHGAAZE032245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	278	320	2.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.036
	SRR3591706	second leaf	58.921
	SRR3591707	mature leaf	59.759
	SRR3591708	Shoot apex	24.321
	SRR3591709	Stem	18.680
	SRR3591710	White floral bud	24.565
	SRR3591711	White flower	53.141
	SRR3591712	Green floral bud	20.783
	SRR3591713	Yellow flower	29.757
SRP173429	SRR8316895	Juvenile bud stage	10.285
	SRR8316896	Juvenile bud stage	7.951
	SRR8316897	Juvenile bud stage	4.694
	SRR8316894	Third green stage	6.427
	SRR8316900	Third green stage	23.200
	SRR8316901	Third green stage	17.044
	SRR8316898	Complete white stage	7.784
	SRR8316899	Complete white stage	40.507
	SRR8316903	Complete white stage	10.432
	SRR8316902	Silver flowering stage	19.561
	SRR8316904	Silver flowering stage	21.875
	SRR8316905	Silver flowering stage	11.335
	SRR8316906	Gold flowering stage	22.918
	SRR8316907	Gold flowering stage	23.346
	SRR8316908	Gold flowering stage	29.492
SRP132670	SRR6706286	Control	28.537
	SRR6706287	Light intensity 50%	34.244
	SRR6706288	Light intensity 20%	37.974
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.498
	CNS0095593	Slightly white alabastrum(diploid) 2	18.120
	CNS0095594	Slightly white alabastrum(diploid) 3	13.168
	CNS0095595	Whole white alabastrum(diploid) 2	13.837
	CNS0095596	Whole white alabastrum(diploid) 3	14.562
	CNS0095597	Whole white alabastrum(diploid) 4	13.722
	CNS0095598	Silvery flower (diploied) 1	13.672
	CNS0095599	Silvery flower (diploied) 2	9.647
	CNS0095600	Silvery flower (diploied) 3	15.747
	CNS0095601	Golden flower (diploid) 1	10.707
	CNS0095602	Golden flower (diploid) 2	16.148
	CNS0095603	Golden flower (diploid) 3	16.185
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.943
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.707
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.665
	CNS0095610	Silvery flower (tetraploid) 1	17.421
	CNS0095611	Silvery flower (tetraploid) 2	11.945
	CNS0095612	Silvery flower (tetraploid) 3	9.892
	CNS0095613	Golden flower (tetraploid) 1	23.020
	CNS0095614	Golden flower (tetraploid) 2	20.762
	CNS0095615	Golden flower (tetraploid) 3	27.761
CRA001975	CRR073297	Stem 1	3.976
	CRR073298	Stem 2	4.612
	CRR073299	Stem 3	4.481
	CRR073300	Leaf 1	3.201
	CRR073301	Leaf 2	7.678
	CRR073302	Leaf 3	6.804
	CRR073303	Juvenile bud 1	3.389
	CRR073304	Juvenile bud 2	2.511
	CRR073305	Juvenile bud 3	3.019
	CRR073306	Third green 1	29.158
	CRR073307	Third green 2	33.619
	CRR073308	Third green 3	31.816
	CRR073309	Second white 1	28.159
	CRR073310	Second white 2	18.280
	CRR073311	Second white 3	17.148
	CRR073312	Silver flowering 1	20.776
	CRR073313	Silver flowering 2	23.192
	CRR073314	Silver flowering 3	20.271
	CRR073315	Gold flowering 1	2.292
	CRR073316	Gold flowering 2	2.520
	CRR073317	Gold flowering 3	2.479
	CRR073318	Tawny withering 1	7.496
	CRR073319	Tawny withering 2	2.627
	CRR073320	Tawny withering 3	11.791