Detail information of GWHGAAZE032253


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243556.10PREDICTED: DNA polymerase zeta catalytic subunit [Nelumbo nucifera]
COGYP_007312033.12E-54DNA polymerase elongation subunit (family B)
Swissprottr|Q766Z3|REV3_ARATH0DNA polymerase zeta catalytic subunit
trEMBLtr|A0A0A0LFW0|A0A0A0LFW0_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN60940.1}
TAIR10AT1G67500.10recovery protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000011gene2933869315+
GWHAAZE00000011mRNA2933869315+
GWHAAZE00000011exon2933829449+
GWHAAZE00000011exon3070330785+
GWHAAZE00000011exon3425234309+
GWHAAZE00000011exon3458134630+
GWHAAZE00000011exon3474934883+
GWHAAZE00000011exon3731737385+
GWHAAZE00000011exon4046540596+
GWHAAZE00000011exon4097141142+
GWHAAZE00000011exon4123041321+
GWHAAZE00000011exon4192342303+
GWHAAZE00000011exon4395944777+
GWHAAZE00000011exon4529945632+
GWHAAZE00000011exon4716347375+
GWHAAZE00000011exon4772547958+
GWHAAZE00000011exon4866648892+
GWHAAZE00000011exon5022150363+
GWHAAZE00000011exon5043951030+
GWHAAZE00000011exon5151851664+
GWHAAZE00000011exon5242552700+
GWHAAZE00000011exon5300853115+
GWHAAZE00000011exon5428054485+
GWHAAZE00000011exon5584756150+
GWHAAZE00000011exon5886559485+
GWHAAZE00000011exon6344963587+
GWHAAZE00000011exon6866669315+
GWHAAZE00000011CDS2933829449+
GWHAAZE00000011CDS3070330785+
GWHAAZE00000011CDS3425234309+
GWHAAZE00000011CDS3458134630+
GWHAAZE00000011CDS3474934883+
GWHAAZE00000011CDS3731737385+
GWHAAZE00000011CDS4046540596+
GWHAAZE00000011CDS4097141142+
GWHAAZE00000011CDS4123041321+
GWHAAZE00000011CDS4192342303+
GWHAAZE00000011CDS4395944777+
GWHAAZE00000011CDS4529945632+
GWHAAZE00000011CDS4716347375+
GWHAAZE00000011CDS4772547958+
GWHAAZE00000011CDS4866648892+
GWHAAZE00000011CDS5022150363+
GWHAAZE00000011CDS5043951030+
GWHAAZE00000011CDS5151851664+
GWHAAZE00000011CDS5242552700+
GWHAAZE00000011CDS5300853115+
GWHAAZE00000011CDS5428054485+
GWHAAZE00000011CDS5584756150+
GWHAAZE00000011CDS5886559485+
GWHAAZE00000011CDS6344963587+
GWHAAZE00000011CDS6866669315+
Transcript Sequence

Network for GWHGAAZE032253

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03104.20DNA_pol_B_exo1551882.60E-05
PF03104.20DNA_pol_B_exo1104711712.70E-06
PF00136.22DNA_pol_B129717441.20E-99
PF14260.7zf-C4pol179218651.40E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02350REV3L, POLZ Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.898
SRR3591706second leaf1.956
SRR3591707mature leaf2.545
SRR3591708Shoot apex2.880
SRR3591709Stem2.760
SRR3591710White floral bud4.836
SRR3591711White flower7.337
SRR3591712Green floral bud2.312
SRR3591713Yellow flower5.998
SRP173429 SRR8316895Juvenile bud stage 1.725
SRR8316896Juvenile bud stage 2.241
SRR8316897Juvenile bud stage 2.402
SRR8316894Third green stage 1.040
SRR8316900Third green stage 1.871
SRR8316901Third green stage 1.895
SRR8316898Complete white stage 0.568
SRR8316899Complete white stage 2.410
SRR8316903Complete white stage 1.285
SRR8316902Silver flowering stage1.013
SRR8316904Silver flowering stage1.623
SRR8316905Silver flowering stage0.641
SRR8316906Gold flowering stage 1.936
SRR8316907Gold flowering stage 2.235
SRR8316908Gold flowering stage 3.754
SRP132670SRR6706286Control1.164
SRR6706287Light intensity 50%1.360
SRR6706288Light intensity 20%1.619
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.116
CNS0095593Slightly white alabastrum(diploid) 21.191
CNS0095594Slightly white alabastrum(diploid) 31.118
CNS0095595Whole white alabastrum(diploid) 20.878
CNS0095596Whole white alabastrum(diploid) 30.867
CNS0095597Whole white alabastrum(diploid) 40.619
CNS0095598Silvery flower (diploied) 11.264
CNS0095599Silvery flower (diploied) 20.981
CNS0095600Silvery flower (diploied) 31.311
CNS0095601Golden flower (diploid) 11.098
CNS0095602Golden flower (diploid) 21.359
CNS0095603Golden flower (diploid) 31.498
CNS0095604Slightly white alabastrum(tetraploid) 12.085
CNS0095605Slightly white alabastrum(tetraploid) 21.708
CNS0095606Slightly white alabastrum(tetraploid) 32.824
CNS0095607Whole white alabastrum(tetraploid) 11.751
CNS0095608Whole white alabastrum(tetraploid) 21.963
CNS0095609Whole white alabastrum(tetraploid) 32.576
CNS0095610Silvery flower (tetraploid) 13.068
CNS0095611Silvery flower (tetraploid) 23.297
CNS0095612Silvery flower (tetraploid) 34.347
CNS0095613Golden flower (tetraploid) 12.009
CNS0095614Golden flower (tetraploid) 22.950
CNS0095615Golden flower (tetraploid) 34.923
CRA001975CRR073297Stem 11.768
CRR073298Stem 21.574
CRR073299Stem 30.670
CRR073300Leaf 11.510
CRR073301Leaf 21.620
CRR073302Leaf 30.425
CRR073303Juvenile bud 10.726
CRR073304Juvenile bud 20.280
CRR073305Juvenile bud 30.721
CRR073306Third green 10.294
CRR073307Third green 20.084
CRR073308Third green 30.403
CRR073309Second white 10.180
CRR073310Second white 20.601
CRR073311Second white 30.623
CRR073312Silver flowering 10.540
CRR073313Silver flowering 20.483
CRR073314Silver flowering 30.495
CRR073315Gold flowering 10.408
CRR073316Gold flowering 21.094
CRR073317Gold flowering 30.557
CRR073318Tawny withering 10.656
CRR073319Tawny withering 20.495
CRR073320Tawny withering 30.699