Gene detail

Detail information of GWHGAAZE032258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	2.3833E-107	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	9E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	1E-77	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000011	gene	291507	296205	-
GWHAAZE00000011	mRNA	291507	296205	-
GWHAAZE00000011	exon	296060	296205	-
GWHAAZE00000011	exon	294505	294752	-
GWHAAZE00000011	exon	292362	292537	-
GWHAAZE00000011	exon	291507	291677	-
GWHAAZE00000011	CDS	296060	296205	-
GWHAAZE00000011	CDS	294505	294752	-
GWHAAZE00000011	CDS	292362	292537	-
GWHAAZE00000011	CDS	291507	291677	-

Transcript Sequence
>GWHTAAZE032296 ATGCTCTATTTGTGTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGGCGTTCTGTGGAGGAAACTAGGCCGTGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCAGAGTCACTATTGGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGTTCAATCATGTACTATGCGAAGCTACGAAGGGAGGTTTTTCTCTCACTTGGTTTCCGAGCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGACAGAGTCAAGATCAAAAAGTGAATCTATTTTAGAGAAAGAAACTACTAAAATACGTGAAGAAGATCATGTTCTGAGACGGAGGAAACAGAATATAAAAGGAGAGGATCCTGCAACGCTTTCACTCGATAATGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTGTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCACAGCATTTTTTGTCATGCATGTGCAGGTTTCGACTCGGTTCTTATCGTCAAGCCCTCCTCTCTACTGGTTCGCCTCTTACGTGATGGTACATCCTAGTAGTAAAAGTAAGATGTGGGGATATTTTATCTGGGCCTACTGCGCGGCCTACATCCTTCTCGGCAGTATACTCTTCCCCAACTTCTATCCTTTCACTTGA

Network for GWHGAAZE032258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	4	246	2.20E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.133
	SRR3591706	second leaf	4.535
	SRR3591707	mature leaf	4.030
	SRR3591708	Shoot apex	8.605
	SRR3591709	Stem	5.616
	SRR3591710	White floral bud	6.654
	SRR3591711	White flower	5.498
	SRR3591712	Green floral bud	7.904
	SRR3591713	Yellow flower	5.745
SRP173429	SRR8316895	Juvenile bud stage	5.048
	SRR8316896	Juvenile bud stage	7.160
	SRR8316897	Juvenile bud stage	3.993
	SRR8316894	Third green stage	2.924
	SRR8316900	Third green stage	8.127
	SRR8316901	Third green stage	6.547
	SRR8316898	Complete white stage	2.861
	SRR8316899	Complete white stage	6.076
	SRR8316903	Complete white stage	4.335
	SRR8316902	Silver flowering stage	2.306
	SRR8316904	Silver flowering stage	2.193
	SRR8316905	Silver flowering stage	1.233
	SRR8316906	Gold flowering stage	4.238
	SRR8316907	Gold flowering stage	6.966
	SRR8316908	Gold flowering stage	4.651
SRP132670	SRR6706286	Control	3.504
	SRR6706287	Light intensity 50%	3.492
	SRR6706288	Light intensity 20%	4.801
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.940
	CNS0095593	Slightly white alabastrum(diploid) 2	4.711
	CNS0095594	Slightly white alabastrum(diploid) 3	4.195
	CNS0095595	Whole white alabastrum(diploid) 2	5.761
	CNS0095596	Whole white alabastrum(diploid) 3	3.981
	CNS0095597	Whole white alabastrum(diploid) 4	6.354
	CNS0095598	Silvery flower (diploied) 1	3.085
	CNS0095599	Silvery flower (diploied) 2	3.024
	CNS0095600	Silvery flower (diploied) 3	2.151
	CNS0095601	Golden flower (diploid) 1	3.181
	CNS0095602	Golden flower (diploid) 2	2.835
	CNS0095603	Golden flower (diploid) 3	2.855
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.939
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.480
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.527
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.840
	CNS0095610	Silvery flower (tetraploid) 1	1.097
	CNS0095611	Silvery flower (tetraploid) 2	1.023
	CNS0095612	Silvery flower (tetraploid) 3	0.536
	CNS0095613	Golden flower (tetraploid) 1	0.408
	CNS0095614	Golden flower (tetraploid) 2	0.582
	CNS0095615	Golden flower (tetraploid) 3	1.582
CRA001975	CRR073297	Stem 1	2.586
	CRR073298	Stem 2	2.700
	CRR073299	Stem 3	1.856
	CRR073300	Leaf 1	5.285
	CRR073301	Leaf 2	3.915
	CRR073302	Leaf 3	2.512
	CRR073303	Juvenile bud 1	1.149
	CRR073304	Juvenile bud 2	1.013
	CRR073305	Juvenile bud 3	1.765
	CRR073306	Third green 1	1.552
	CRR073307	Third green 2	1.613
	CRR073308	Third green 3	1.697
	CRR073309	Second white 1	2.106
	CRR073310	Second white 2	1.507
	CRR073311	Second white 3	0.360
	CRR073312	Silver flowering 1	1.947
	CRR073313	Silver flowering 2	0.420
	CRR073314	Silver flowering 3	2.366
	CRR073315	Gold flowering 1	2.301
	CRR073316	Gold flowering 2	4.593
	CRR073317	Gold flowering 3	1.586
	CRR073318	Tawny withering 1	1.347
	CRR073319	Tawny withering 2	1.716
	CRR073320	Tawny withering 3	2.496