Gene detail

Detail information of GWHGAAZE032267

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	2.07644E-28	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	1E-12	F-box protein At3g07870
trEMBL	tr\|A0A022Q8A6\|A0A022Q8A6_ERYGU	5E-25	Uncharacterized protein {ECO:0000313\|EMBL:EYU24907.1}
TAIR10	AT3G07870.1	1E-11	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000014	gene	240589	241843	-
GWHAAZE00000014	mRNA	240589	241843	-
GWHAAZE00000014	exon	240589	240822	-
GWHAAZE00000014	exon	241078	241206	-
GWHAAZE00000014	exon	241294	241547	-
GWHAAZE00000014	exon	241639	241843	-
GWHAAZE00000014	CDS	241639	241843	-
GWHAAZE00000014	CDS	241294	241547	-
GWHAAZE00000014	CDS	241078	241206	-
GWHAAZE00000014	CDS	240589	240822	-

Transcript Sequence
>GWHTAAZE032305 ATGTCAATGGACTATATACCTCCTGAATTGTTGATCGACATCCTCACCAGATTACCTGTAAAGACTCTCCTGCGATACACAAGCGTCTCCAAATCATGGCACTCTCTCATCACTCCCCCAAGTTTCATCACTACCCATCTCAATAATCAAAGAAATTTAAACAACCAAACTCCCTTCTTATTGTTCAGGCATTGCACCGAAGTGGTGGCAAATCAAGATCCTTGGATTGTAGGTACATGTGATGGATTGGTATGCTTGTCTAGTTCAGATATTGTGGCTTTATGGAATCCTTCTCTTCGAAAATCACTCATCCTTCCAAAGCCTTCAATCCAGTCGCATGGCCTTATTCCGAGAGATATTCAGTCTTGTACCGGATTTGGAATCCACCCCGTAACCAATGACTATAAGATTGTGAGGCTTACCTATGTCCGTTCAGATAGGGTCCTAGTACCGCCAGAGGCCTTTCTGAATGGTGTTGTCCACTGGGCTGGACGTAAACCCAAATATATTTTCAACAAGTCTTGTAGTAGTTTACGTACTGTGATTCTGTCATTCGACATGAGAAACGACGCGCTAGGTTTTGTAAAGTTGGTCTCCTATGACCCTAAAAGCAAACTAATCAAGAGTCTAAACCTACATGGAATACCAGGCTCCTTTTACGTAGATACTTACAACAAGAACCTTGTTTTAACCAGGGTCTTAAATGAAGTACTGGGGAGACTGGAAAATTCTGGTGATGCAGTTACATGCAGGGCAACATCCGTTCTGCCTACAGAAGAAGATGAGGTTAAGGGTAAAAGTACAATAATGAAGAAAGAATAA

Network for GWHGAAZE032267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	4	39	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.134
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.778
	SRR8316896	Juvenile bud stage	0.406
	SRR8316897	Juvenile bud stage	0.394
	SRR8316894	Third green stage	0.336
	SRR8316900	Third green stage	0.403
	SRR8316901	Third green stage	0.346
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	0.953
	SRR8316903	Complete white stage	0.040
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.061
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.043
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.036
	CNS0095593	Slightly white alabastrum(diploid) 2	0.595
	CNS0095594	Slightly white alabastrum(diploid) 3	0.143
	CNS0095595	Whole white alabastrum(diploid) 2	0.161
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.111
	CNS0095598	Silvery flower (diploied) 1	0.354
	CNS0095599	Silvery flower (diploied) 2	0.748
	CNS0095600	Silvery flower (diploied) 3	0.170
	CNS0095601	Golden flower (diploid) 1	0.297
	CNS0095602	Golden flower (diploid) 2	0.462
	CNS0095603	Golden flower (diploid) 3	0.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.026
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.042
	CRR073298	Stem 2	0.079
	CRR073299	Stem 3	0.077
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.140
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.091
	CRR073304	Juvenile bud 2	0.015
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.149
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.201
	CRR073319	Tawny withering 2	1.457
	CRR073320	Tawny withering 3	0.257