Detail information of GWHGAAZE032269


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEY85029.11.9994E-150cohesin subunit [Camellia sinensis]
Swissprottr|Q8W1Y0|SSC14_ARATH2E-126Sister chromatid cohesion 1 protein 4
trEMBLtr|H6UJ37|H6UJ37_CAMSI7E-151Cohesin subunit {ECO:0000313|EMBL:AEY85029.1}
TAIR10AT5G16270.16E-109sister chromatid cohesion 1 protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000014gene282968293420-
GWHAAZE00000014mRNA282968293420-
GWHAAZE00000014exon282968283318-
GWHAAZE00000014exon283570283672-
GWHAAZE00000014exon285434285492-
GWHAAZE00000014exon287550287593-
GWHAAZE00000014exon287692287789-
GWHAAZE00000014exon288497288758-
GWHAAZE00000014exon293129293420-
GWHAAZE00000014five_prime_UTR293253293420-
GWHAAZE00000014CDS293129293252-
GWHAAZE00000014CDS288497288758-
GWHAAZE00000014CDS287692287789-
GWHAAZE00000014CDS287550287593-
GWHAAZE00000014CDS285434285492-
GWHAAZE00000014CDS283570283672-
GWHAAZE00000014CDS282968283318-
Transcript Sequence

Network for GWHGAAZE032269

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04825.14Rad21_Rec8_N11011.20E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06670SCC1, MCD1, RAD21 Cell cycle map04110
Cell cycle - yeastmap04111

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.695
SRR3591706second leaf16.231
SRR3591707mature leaf19.203
SRR3591708Shoot apex14.148
SRR3591709Stem17.482
SRR3591710White floral bud24.594
SRR3591711White flower25.688
SRR3591712Green floral bud13.902
SRR3591713Yellow flower17.884
SRP173429 SRR8316895Juvenile bud stage 8.821
SRR8316896Juvenile bud stage 11.291
SRR8316897Juvenile bud stage 6.882
SRR8316894Third green stage 5.600
SRR8316900Third green stage 12.898
SRR8316901Third green stage 13.271
SRR8316898Complete white stage 4.548
SRR8316899Complete white stage 17.051
SRR8316903Complete white stage 11.755
SRR8316902Silver flowering stage5.856
SRR8316904Silver flowering stage14.768
SRR8316905Silver flowering stage5.967
SRR8316906Gold flowering stage 19.440
SRR8316907Gold flowering stage 17.829
SRR8316908Gold flowering stage 17.567
SRP132670SRR6706286Control19.839
SRR6706287Light intensity 50%20.081
SRR6706288Light intensity 20%22.161
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.075
CNS0095593Slightly white alabastrum(diploid) 23.402
CNS0095594Slightly white alabastrum(diploid) 34.984
CNS0095595Whole white alabastrum(diploid) 23.335
CNS0095596Whole white alabastrum(diploid) 31.325
CNS0095597Whole white alabastrum(diploid) 43.827
CNS0095598Silvery flower (diploied) 112.522
CNS0095599Silvery flower (diploied) 26.524
CNS0095600Silvery flower (diploied) 322.397
CNS0095601Golden flower (diploid) 18.686
CNS0095602Golden flower (diploid) 224.854
CNS0095603Golden flower (diploid) 324.292
CNS0095604Slightly white alabastrum(tetraploid) 14.572
CNS0095605Slightly white alabastrum(tetraploid) 23.001
CNS0095606Slightly white alabastrum(tetraploid) 315.123
CNS0095607Whole white alabastrum(tetraploid) 12.739
CNS0095608Whole white alabastrum(tetraploid) 22.727
CNS0095609Whole white alabastrum(tetraploid) 310.603
CNS0095610Silvery flower (tetraploid) 121.321
CNS0095611Silvery flower (tetraploid) 219.150
CNS0095612Silvery flower (tetraploid) 315.443
CNS0095613Golden flower (tetraploid) 14.747
CNS0095614Golden flower (tetraploid) 215.986
CNS0095615Golden flower (tetraploid) 322.253
CRA001975CRR073297Stem 118.109
CRR073298Stem 217.465
CRR073299Stem 314.670
CRR073300Leaf 118.774
CRR073301Leaf 215.102
CRR073302Leaf 312.666
CRR073303Juvenile bud 19.904
CRR073304Juvenile bud 28.088
CRR073305Juvenile bud 314.530
CRR073306Third green 17.055
CRR073307Third green 25.920
CRR073308Third green 38.397
CRR073309Second white 13.722
CRR073310Second white 28.390
CRR073311Second white 311.804
CRR073312Silver flowering 16.959
CRR073313Silver flowering 25.835
CRR073314Silver flowering 36.781
CRR073315Gold flowering 14.439
CRR073316Gold flowering 217.284
CRR073317Gold flowering 34.532
CRR073318Tawny withering 18.432
CRR073319Tawny withering 27.500
CRR073320Tawny withering 37.920