Gene detail

Detail information of GWHGAAZE032293

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	3.39901E-88	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	1E-29	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	1E-88	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	1E-20	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000016	gene	222090	223271	+
GWHAAZE00000016	mRNA	222090	223271	+
GWHAAZE00000016	exon	222090	223271	+
GWHAAZE00000016	CDS	222090	223271	+

Transcript Sequence
>GWHTAAZE032331 ATGTCAGGAGAGTACTACCTTCCCCAAGAGCTCCTCATTCAGATCCTCTTATGGTTACCCCCAAAGTCTCTTCTCCAATTGAGGTGCGTCTCTAAATCTTGGTGCTCTCTAATTTCAAGCCCTAGTTTCATTGATATCCACACACGCAACCTCCCTCACGTGACCAACACTCGCAAACTCATCCGCCACTGCACTACTACATCTCCTCGCCAAGAAGTCTATTCAGTGTTTTTCGATAACCAATCATCGTTTGACCGCGACGATGATGTCAAAATTGATTTCCCCTTTACTAGCACAACCGAATATAGAATTGTGGGTTCTTGTAATGGTCTCATTTGCCTCTCAGATGAAAACATGTGGGACGACGTATATACAACTGTTCTATGGAACCCTGCAATTAGGAGAAAATTGACACTTCCCCTGCCCAACATTATAGTAAGGAATCCGAGATCTCTTCATGTTCTTGGATTTGGGTTTGATTGTAAGGCTAACGATTACAAGATCGTGCAACTTTCTTACAAAAATATTCATTCGTTGCCCCCTTCGGTTGAGGTTTTTAGTGTTAAAACTGGGGCATGGAGGGGCATTAGTAGTCCTGCTCCTCTGTGTCATATCGGCGGGGATCTCTGGCGCCAGAGATTCTTTAATGGAGCTGCACATTGGGTCGCTTGTACTCAGAATTGCGGACAAGATCACAGTTTGATTTTGTCCTTTGATATGTGTGATGAGGTCTTTCGTGAGATTAAGTTGCCTGAATGTTTAGCGGGCGAATCCCCTTGGTGCATGGGGATGGTTGTGATACAAGATTCGTTTTCTGTTGTAGAGAATGATAAATCCCGTCAATTCCTTCACGTGCTTTCAGTTTGGGTCATGAAAGATTACGGTGTGGTTGAGTCTTGGACCAAGCAATATAAGATTGATACAGAGGCTGGTTTGGGAAGACTGCTTGGTGTTCGGAGGAACGGTGAAGTATTATTAACAACAAGAAGTGAGGAGCTGGTAGATTATGACGGTGAACTATTATTGATAAGAAATGAAGAGCTGGTAGATTATGATGTGCAGACCCGAGAAAGCATGGACCTTATCACTGGTGGGATTAACAACAACTTTTTTGTGGATACTTATCAGGAGAGCTTCGCTTTACTCTTTGAAGGGGAAAAAACCCAAATCTACGGAAGGTAG

Network for GWHGAAZE032293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	7	43	2.50E-09
PF07734.14	FBA_1	215	310	8.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.489
	SRR3591706	second leaf	2.003
	SRR3591707	mature leaf	1.534
	SRR3591708	Shoot apex	8.935
	SRR3591709	Stem	1.504
	SRR3591710	White floral bud	7.135
	SRR3591711	White flower	5.764
	SRR3591712	Green floral bud	9.256
	SRR3591713	Yellow flower	1.230
SRP173429	SRR8316895	Juvenile bud stage	13.153
	SRR8316896	Juvenile bud stage	17.927
	SRR8316897	Juvenile bud stage	7.796
	SRR8316894	Third green stage	3.158
	SRR8316900	Third green stage	6.458
	SRR8316901	Third green stage	10.035
	SRR8316898	Complete white stage	2.665
	SRR8316899	Complete white stage	9.292
	SRR8316903	Complete white stage	5.645
	SRR8316902	Silver flowering stage	2.077
	SRR8316904	Silver flowering stage	4.747
	SRR8316905	Silver flowering stage	1.325
	SRR8316906	Gold flowering stage	5.032
	SRR8316907	Gold flowering stage	5.718
	SRR8316908	Gold flowering stage	5.726
SRP132670	SRR6706286	Control	4.948
	SRR6706287	Light intensity 50%	5.624
	SRR6706288	Light intensity 20%	5.369
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.251
	CNS0095593	Slightly white alabastrum(diploid) 2	7.892
	CNS0095594	Slightly white alabastrum(diploid) 3	7.972
	CNS0095595	Whole white alabastrum(diploid) 2	6.473
	CNS0095596	Whole white alabastrum(diploid) 3	4.097
	CNS0095597	Whole white alabastrum(diploid) 4	6.302
	CNS0095598	Silvery flower (diploied) 1	10.588
	CNS0095599	Silvery flower (diploied) 2	16.491
	CNS0095600	Silvery flower (diploied) 3	9.113
	CNS0095601	Golden flower (diploid) 1	8.204
	CNS0095602	Golden flower (diploid) 2	9.346
	CNS0095603	Golden flower (diploid) 3	7.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.956
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.670
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.096
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.664
	CNS0095610	Silvery flower (tetraploid) 1	1.141
	CNS0095611	Silvery flower (tetraploid) 2	0.966
	CNS0095612	Silvery flower (tetraploid) 3	0.780
	CNS0095613	Golden flower (tetraploid) 1	0.398
	CNS0095614	Golden flower (tetraploid) 2	1.475
	CNS0095615	Golden flower (tetraploid) 3	0.151
CRA001975	CRR073297	Stem 1	10.476
	CRR073298	Stem 2	8.331
	CRR073299	Stem 3	4.820
	CRR073300	Leaf 1	9.573
	CRR073301	Leaf 2	12.306
	CRR073302	Leaf 3	3.780
	CRR073303	Juvenile bud 1	4.262
	CRR073304	Juvenile bud 2	3.012
	CRR073305	Juvenile bud 3	9.216
	CRR073306	Third green 1	2.172
	CRR073307	Third green 2	1.416
	CRR073308	Third green 3	1.401
	CRR073309	Second white 1	1.102
	CRR073310	Second white 2	1.271
	CRR073311	Second white 3	0.943
	CRR073312	Silver flowering 1	0.829
	CRR073313	Silver flowering 2	0.405
	CRR073314	Silver flowering 3	0.687
	CRR073315	Gold flowering 1	4.488
	CRR073316	Gold flowering 2	6.665
	CRR073317	Gold flowering 3	4.049
	CRR073318	Tawny withering 1	4.865
	CRR073319	Tawny withering 2	3.709
	CRR073320	Tawny withering 3	7.599