Gene detail

Detail information of GWHGAAZE032321

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000016	gene	588536	594810	-
GWHAAZE00000016	mRNA	588536	594810	-
GWHAAZE00000016	exon	588536	588635	-
GWHAAZE00000016	exon	589014	589145	-
GWHAAZE00000016	exon	589275	589385	-
GWHAAZE00000016	exon	589888	589998	-
GWHAAZE00000016	exon	590570	590707	-
GWHAAZE00000016	exon	590929	591063	-
GWHAAZE00000016	exon	591160	591379	-
GWHAAZE00000016	exon	591477	591514	-
GWHAAZE00000016	exon	592353	592544	-
GWHAAZE00000016	exon	592869	593021	-
GWHAAZE00000016	exon	593164	593292	-
GWHAAZE00000016	exon	593607	593727	-
GWHAAZE00000016	exon	594708	594810	-
GWHAAZE00000016	CDS	594708	594810	-
GWHAAZE00000016	CDS	593607	593727	-
GWHAAZE00000016	CDS	593164	593292	-
GWHAAZE00000016	CDS	592869	593021	-
GWHAAZE00000016	CDS	592353	592544	-
GWHAAZE00000016	CDS	591477	591514	-
GWHAAZE00000016	CDS	591160	591379	-
GWHAAZE00000016	CDS	590929	591063	-
GWHAAZE00000016	CDS	590570	590707	-
GWHAAZE00000016	CDS	589888	589998	-
GWHAAZE00000016	CDS	589275	589385	-
GWHAAZE00000016	CDS	589014	589145	-
GWHAAZE00000016	CDS	588536	588635	-

Transcript Sequence
>GWHTAAZE032359 TTGGACAGAAAAGAGGACATAGCAAAGCCAAGTTGTGAGGGACCCAGTAACTTTAACTCTCAAGATAGGAATACTTCCTACATCGACGAGGTTGAAGTTGGAGCTGGTGAGTATTCAAGAATCAATAGTGTTGATCGAGTGGCGACTGATGCTAACGAAGAGCATTTAAATGAGAAAACCAATAAAAGTTGTGAAGAGGTGGACAAAATTCATGATGCTGACAGGAGTGTAGTCCACAAATGTGATTTTGAGGTGGTAAAAGAAGTTGACCTCGTGTTAGGTGATGGTGGAAAGCTGAACAACAGTAGTTGTTCGGAGAAGCTATTATTACAAGAGAATGGAAATGTTTTGAGCCCAAGTTCAAACGGTGACGAAGGCAACATTGGGCTTAGACATTGTGGAGAAGTGAAGAAAATGAAAAGAAAAGAAACAATCACGGAGTGCAAACTTGTGGAGGATGATGCTAGAAATGCTGCTCATCAAGAAATTAGGGATAAAAATCCAAGTACGTATTTCTTCTCCATCTTGATCTCATCATGCTCAGGCAAATTTGTTTGGTTATGCAGCCAAGATAAAAGTTTGTCAATCTCGCCTCAGAAAAAACTAAAGGAAGTAGAGTTGGGAGATGGCAGTTCTAAAAAAGTAGGTTTTGATCTGGCAGATGATGCTTTAGAATCACATATGAAACTACAGAATGGAAGTCTCAGCCAGTCAAAGAAAGTGAAGAAGAAAAAAAATAAAGTTATGGAAGATGATGATACACATCTTGACAAGTACATAATCAGGGAAAAAGAACCTTTTCAACAAGAGCAGGACCAGTACATTGTTAAGGAAGGAGAAAAGGAAATTGCAAAAGAAATGGCTACAAGTGGAAGTTGTAAAAGAGAAGAAAAATCAACTAAGAGAGTGAAAGTCAGCAAAAGAAGAAGTGGTCAACATGATGGAAATCGAAAGGGAAGTGAGCTTGGCTCATTGGATTACATGGAGGATAGAGCTGGAGTTGGTGAAAAGGACAGAAAAGAGAAGAATGAATCGCTTGCCAACGATATAAGCCAAAGGCAAAATAAGATCATAGATGATAAGAAAATTGAGGTGGTTGCGGGTGGTTCATCAGCCTCCAAAAGGAAAAAGCTAACGAAAGTAATGTTTGCGGAAGCCACTCTGGGAAAGCAGGCTCTTGATTTACCAGATGATGTGCTAAAATCACCCCCGAAATTGCGACGTGATCAGGGTGACCTTGGCGGGATATATGCAACGGAGTCTGTGGACAATGGAGCTATAAAAGGCGTCGATGATAGAGAGCAGGGTCAAAACGATAAGCTAGCTGATGTTACTGATGAAGGTGACCATGGCGGGGTTTATGCAATGAAGTCTGTGAACATTGGAGGTATAAAAGGTGTCGATGATAGAAAGCATAGTCAGAATGATAAGCTAGCTAATGTTACTGATGACTGGCAAGCTAGTACTTTATCGGTCTCCCATAGGAAAAAGAAGAAAGTAAGGATGGGAGAAGGCATTTTTGGCGAGAAGGATCTCAATCCACGAGATCATCCTTTGGAGTCCCAATCAAAACTACCAAATTTGAGGCTTCATGACGATAATGGAAATGCTCTCGAAAGAAGTCACAGCAATGAAATGAAAGAGAAGAAGAAGAAGAAAAAGAGTAAGGCCTTCAGGATATAA

Network for GWHGAAZE032321

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0163

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.926
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.318
	SRR3591713	Yellow flower	0.063
SRP173429	SRR8316895	Juvenile bud stage	2.955
	SRR8316896	Juvenile bud stage	4.081
	SRR8316897	Juvenile bud stage	1.539
	SRR8316894	Third green stage	1.572
	SRR8316900	Third green stage	3.224
	SRR8316901	Third green stage	4.106
	SRR8316898	Complete white stage	0.821
	SRR8316899	Complete white stage	2.763
	SRR8316903	Complete white stage	1.011
	SRR8316902	Silver flowering stage	0.843
	SRR8316904	Silver flowering stage	0.662
	SRR8316905	Silver flowering stage	0.335
	SRR8316906	Gold flowering stage	0.733
	SRR8316907	Gold flowering stage	1.667
	SRR8316908	Gold flowering stage	0.537
SRP132670	SRR6706286	Control	3.625
	SRR6706287	Light intensity 50%	3.246
	SRR6706288	Light intensity 20%	2.755
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.910
	CNS0095593	Slightly white alabastrum(diploid) 2	7.684
	CNS0095594	Slightly white alabastrum(diploid) 3	9.209
	CNS0095595	Whole white alabastrum(diploid) 2	5.916
	CNS0095596	Whole white alabastrum(diploid) 3	4.650
	CNS0095597	Whole white alabastrum(diploid) 4	4.608
	CNS0095598	Silvery flower (diploied) 1	2.521
	CNS0095599	Silvery flower (diploied) 2	2.850
	CNS0095600	Silvery flower (diploied) 3	0.878
	CNS0095601	Golden flower (diploid) 1	3.026
	CNS0095602	Golden flower (diploid) 2	0.928
	CNS0095603	Golden flower (diploid) 3	0.493
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.596
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.894
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.352
	CNS0095610	Silvery flower (tetraploid) 1	1.190
	CNS0095611	Silvery flower (tetraploid) 2	0.354
	CNS0095612	Silvery flower (tetraploid) 3	0.517
	CNS0095613	Golden flower (tetraploid) 1	0.317
	CNS0095614	Golden flower (tetraploid) 2	0.493
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	3.633
	CRR073298	Stem 2	5.132
	CRR073299	Stem 3	1.632
	CRR073300	Leaf 1	4.331
	CRR073301	Leaf 2	3.717
	CRR073302	Leaf 3	0.776
	CRR073303	Juvenile bud 1	1.505
	CRR073304	Juvenile bud 2	1.216
	CRR073305	Juvenile bud 3	0.914
	CRR073306	Third green 1	0.231
	CRR073307	Third green 2	0.184
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.081
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.182
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.090
	CRR073315	Gold flowering 1	0.028
	CRR073316	Gold flowering 2	0.059
	CRR073317	Gold flowering 3	0.061
	CRR073318	Tawny withering 1	3.870
	CRR073319	Tawny withering 2	4.080
	CRR073320	Tawny withering 3	2.329