Gene detail

Detail information of GWHGAAZE032366

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659863.1	1.87426E-88	PREDICTED: DNA polymerase zeta catalytic subunit isoform X4 [Vitis vinifera]
Swissprot	tr\|Q766Z3\|REV3_ARATH	1E-68	DNA polymerase zeta catalytic subunit
trEMBL	tr\|W9RQ54\|W9RQ54_9ROSA	1E-85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313\|EMBL:EXC02386.1}
TAIR10	AT1G67500.1	3E-61	recovery protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000020	gene	123845	125940	+
GWHAAZE00000020	mRNA	123845	125940	+
GWHAAZE00000020	exon	123845	124054	+
GWHAAZE00000020	exon	125386	125528	+
GWHAAZE00000020	exon	125607	125940	+
GWHAAZE00000020	CDS	123845	124054	+
GWHAAZE00000020	CDS	125386	125528	+
GWHAAZE00000020	CDS	125607	125940	+

Transcript Sequence
>GWHTAAZE032404 ATGATGCCTCTTCATAATGAGGTGACAACAACAGTATTGCAAAGGGAAGGAAATATTTCGAAAGTGAAACAGGGAAGTGGTTGCTCGCAAGATATCTCTCAGATTTCTGGTCCTGATGGGAAGTCAAAGCTGACACCTTTAAGTCAAATTGGATTTCGGGATCCTGCCAGTGTTGGTGGTGGACAGCAGCTAACATTATTAAGTATAGAGGTTCAAGCAGAATCTAGGGGAGACTTGCGATCTGACCCTCGATTTGATGCCATCAATTTAATAGTTCTTGTTTTTCAAGAGGATGATGATCACATCCGAGATGCACATGTCCTCGTGCGTAGTGATACTGAAGGTGTTCAAAAGAATATTGATGGAACAACTGGTTGCAAGGTCTTGGTTTCCTCTGAAGAGAAGCACCGGTTTAACCACTTTATAAAGATCATTTCTTCTTATGATTCAGATATATTAGTAGGATGGGATATTCAAGGTGGTTCCTTTGGTTTTCTAGCTGAGAGGGCTGCATATTTTGGCATTGGTTTACTCAATAAAATATCTCGCACACCATCTCAAAGCATTGTGACTGCCATAGTTTCCAATATTCAAGACAAAGGAATAGTAAAGAATGATCTTCTGGAGACTTTAATGTCCGATTCTGTTCTAATTGAAGATGCAATAATTGAGGATGAATGGGGTTGA

Network for GWHGAAZE032366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03104.20	DNA_pol_B_exo1	63	194	4.30E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02350	REV3L, POLZ	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.120
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.071
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.121
	SRR8316896	Juvenile bud stage	0.073
	SRR8316897	Juvenile bud stage	0.261
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.026
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.123
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.351
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.029
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.055
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.126
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.090
	CNS0095610	Silvery flower (tetraploid) 1	0.080
	CNS0095611	Silvery flower (tetraploid) 2	0.029
	CNS0095612	Silvery flower (tetraploid) 3	0.757
	CNS0095613	Golden flower (tetraploid) 1	0.003
	CNS0095614	Golden flower (tetraploid) 2	0.319
	CNS0095615	Golden flower (tetraploid) 3	0.441
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.014
	CRR073301	Leaf 2	0.010
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.007
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000