Gene detail

Detail information of GWHGAAZE032381

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004290871.1	9.8507E-124	PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9XF91\|PSBS_ARATH	6E-119	Photosystem II 22 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|M5XWJ5\|M5XWJ5_PRUPE	1E-120	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23555.1}
TAIR10	AT1G44575.1	8E-75	Chlorophyll A-B binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000019	gene	14793	17587	-
GWHAAZE00000019	mRNA	14793	17587	-
GWHAAZE00000019	exon	14793	15040	-
GWHAAZE00000019	exon	15770	16013	-
GWHAAZE00000019	exon	16749	16862	-
GWHAAZE00000019	exon	17375	17587	-
GWHAAZE00000019	CDS	17375	17587	-
GWHAAZE00000019	CDS	16749	16862	-
GWHAAZE00000019	CDS	15770	16013	-
GWHAAZE00000019	CDS	14793	15040	-

Transcript Sequence
>GWHTAAZE032419 ATGGCTGCTCAAACAATGCTCCTAATGCCAAGTTCTGTATCTGGGCATACATTGAAGAGAACAGAGTCATTGGCTCAAACACTTGGTTCCAACAAGTCTTACTCAAAAAACCTCTTATTGCCTCCTTTTGCTACTTATTCTACCTCTTCTTCATATTCACCTATTGGAATTGTTGCTCTCTTCAAGTCTAAAACCAAAGCCCCTGTCAAGAAGGCAACACCACCAAAGCCAAAGGTTGAAGACGGGATATTTGGAACCTCAGGAGGCATTGGTTTTACAAAGGCAAATGAACTCTTTGTTGGTCGAGTTGCCATGATTGGCTTTGCTGCATCATTGTTGGGAGAAGCAATAACAGGAAAGGGAATTCTAGCACAATTGAACTTGGAAACTGGAATTCCAATTTATGAGGCAGAGCCATTGTTGTTGTTCTTCATCCTCTTCACTCTTCTCGGAGCCATCGGAGCTTTGGGAGACCGTGGTCAATTCGTCGACGACCCTCCCACTGGACTCGACCGAGCTGTCGTCCCCCCCGGCAAAGGTTTAAGATCCACATTGGGTCTTAGCGAAGGAGGTCCACTATTTGGATTTACAAAATCAAACGAGCTATTTGTTGGTAGGTTGGCTCAATTGGGAATTGCATTCTCCTTAATAGGAGAAATCATAACAGGAAAGGGAGCTCTGGCTCAACTCAACATTGAGACCGGCATTCCGATCAGCGACATCGAACCCCTAGTGTTGTTCAACGTCGCCTTCTTCTTCTTCGCCGCTTTGAATCCCGGTACTGGAAAATTCATCACCGATGAGGAAGCTGAAGATTAA

Network for GWHGAAZE032381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	89	216	6.10E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03542	psbS	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	423.850
	SRR3591706	second leaf	2174.687
	SRR3591707	mature leaf	1522.811
	SRR3591708	Shoot apex	782.855
	SRR3591709	Stem	218.383
	SRR3591710	White floral bud	20.899
	SRR3591711	White flower	44.978
	SRR3591712	Green floral bud	31.475
	SRR3591713	Yellow flower	5.971
SRP173429	SRR8316895	Juvenile bud stage	150.554
	SRR8316896	Juvenile bud stage	125.707
	SRR8316897	Juvenile bud stage	137.581
	SRR8316894	Third green stage	52.783
	SRR8316900	Third green stage	101.118
	SRR8316901	Third green stage	91.847
	SRR8316898	Complete white stage	17.526
	SRR8316899	Complete white stage	47.545
	SRR8316903	Complete white stage	36.185
	SRR8316902	Silver flowering stage	11.535
	SRR8316904	Silver flowering stage	10.475
	SRR8316905	Silver flowering stage	4.926
	SRR8316906	Gold flowering stage	18.270
	SRR8316907	Gold flowering stage	14.447
	SRR8316908	Gold flowering stage	24.288
SRP132670	SRR6706286	Control	98.427
	SRR6706287	Light intensity 50%	71.663
	SRR6706288	Light intensity 20%	67.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	86.823
	CNS0095593	Slightly white alabastrum(diploid) 2	69.000
	CNS0095594	Slightly white alabastrum(diploid) 3	73.896
	CNS0095595	Whole white alabastrum(diploid) 2	67.603
	CNS0095596	Whole white alabastrum(diploid) 3	42.452
	CNS0095597	Whole white alabastrum(diploid) 4	47.438
	CNS0095598	Silvery flower (diploied) 1	167.827
	CNS0095599	Silvery flower (diploied) 2	154.999
	CNS0095600	Silvery flower (diploied) 3	37.407
	CNS0095601	Golden flower (diploid) 1	135.987
	CNS0095602	Golden flower (diploid) 2	74.319
	CNS0095603	Golden flower (diploid) 3	71.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	100.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	101.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	147.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	76.778
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.574
	CNS0095610	Silvery flower (tetraploid) 1	39.603
	CNS0095611	Silvery flower (tetraploid) 2	66.926
	CNS0095612	Silvery flower (tetraploid) 3	46.399
	CNS0095613	Golden flower (tetraploid) 1	8.068
	CNS0095614	Golden flower (tetraploid) 2	29.558
	CNS0095615	Golden flower (tetraploid) 3	4.477
CRA001975	CRR073297	Stem 1	213.101
	CRR073298	Stem 2	168.147
	CRR073299	Stem 3	248.073
	CRR073300	Leaf 1	53.624
	CRR073301	Leaf 2	86.402
	CRR073302	Leaf 3	60.074
	CRR073303	Juvenile bud 1	62.418
	CRR073304	Juvenile bud 2	48.831
	CRR073305	Juvenile bud 3	56.792
	CRR073306	Third green 1	24.557
	CRR073307	Third green 2	10.062
	CRR073308	Third green 3	15.980
	CRR073309	Second white 1	23.756
	CRR073310	Second white 2	17.326
	CRR073311	Second white 3	9.667
	CRR073312	Silver flowering 1	7.068
	CRR073313	Silver flowering 2	8.878
	CRR073314	Silver flowering 3	7.590
	CRR073315	Gold flowering 1	1701.695
	CRR073316	Gold flowering 2	1757.500
	CRR073317	Gold flowering 3	1435.097
	CRR073318	Tawny withering 1	120.312
	CRR073319	Tawny withering 2	172.689
	CRR073320	Tawny withering 3	110.023