Gene detail

Detail information of GWHGAAZE032394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006372310.1	0	hypothetical protein POPTR_0017s00430g [Populus trichocarpa]
COG	YP_008432369.1	5E-61	hypothetical protein N186_05055
trEMBL	tr\|U5FL66\|U5FL66_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP50107.1}
TAIR10	AT3G51270.1	2E-139	protein serine/threonine kinases;ATP binding;catalytics

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	709790	714642	+
GWHAAZE00000021	mRNA	709790	714642	+
GWHAAZE00000021	exon	709790	709796	+
GWHAAZE00000021	exon	709882	709967	+
GWHAAZE00000021	exon	710116	710162	+
GWHAAZE00000021	exon	710442	710512	+
GWHAAZE00000021	exon	710607	710720	+
GWHAAZE00000021	exon	711613	711788	+
GWHAAZE00000021	exon	711869	711957	+
GWHAAZE00000021	exon	713944	714061	+
GWHAAZE00000021	exon	714330	714403	+
GWHAAZE00000021	exon	714525	714642	+
GWHAAZE00000021	CDS	709790	709796	+
GWHAAZE00000021	CDS	709882	709967	+
GWHAAZE00000021	CDS	710116	710162	+
GWHAAZE00000021	CDS	710442	710512	+
GWHAAZE00000021	CDS	710607	710720	+
GWHAAZE00000021	CDS	711613	711788	+
GWHAAZE00000021	CDS	711869	711957	+
GWHAAZE00000021	CDS	713944	714061	+
GWHAAZE00000021	CDS	714330	714403	+
GWHAAZE00000021	CDS	714525	714642	+

Transcript Sequence
>GWHTAAZE032432 GACTTGGCCATGAAGCTCACAGTGGACATTTTGAGGTACCTCTCGAAAGACGACTTCAGGGTTCTCACTGCTGTCGAAATGGGAATGCGCAATCATGAAATTGTTCCTGCGGAGCTCATTGATCGGATTGCTGCTCTCAAACATGGGGGCACCTACAAAGTGTTGAAGAATTTGCTCAAACACAAACTGTTGCACCATGACGCTTCCAAATATGACGGCTTCCGGCTCACCTACCTTGGTTATGATTATCTTGCTATCAAGACACTAGTAAACCGTGGAGTTTTTACTGCAGTGGGTCGCCAAATCGGTGTTGGGAAAGAGTCTGATATCTTTGAGGTTGCCACTGAAGACGGTACAATCCTTGCGATCAAGCTGCACAGGCTGGGTAGAATTTCGTTTAGGGCTGTAAAATCAAAGCGTGATTACTTGAAGCACCGCAGCAGCTATAATTGGCTCTACTTGTCTAGGCTTGCTGCTCTTAAGGAATTTGCTTTTATGAAGGCTTTGCAAGAACATGGTTTCCCTGTTCCAAATGCTGTGGATTGCAATCGGCATTGTGTAGTTATGTCGCTTGTACAAGGTTATCCACTTGTGCAGGTGAAGCAATTGCAAAACCCGGACACAGTATTTGAAACAATAGTTGGTCTTATTGTTCGTTTGGCAGAGCATGGCCTTATTCATTGTGACTTCAATGAATTCAACATTATGATTGACGATGATGAGGAGGTCACCATCATTGATTTCCCACAAATGGTATCAGTATCTCATCGTAATGCACAAATGTACTTTGACCGCGATGTCGAATGCATCTTTAAGTTTTTCACCCGGAGGTTAGTGGTTGATTTTATGATATTTGAGATATTTGTTTGCTTTGAAAAGTGGTTTTGGGAAATTGGTTAG

Network for GWHGAAZE032394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09202.12	Rio2_N	11	92	3.30E-35
PF01163.23	RIO1	109	280	9.00E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07179	RIOK2	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.909
	SRR3591706	second leaf	20.051
	SRR3591707	mature leaf	14.758
	SRR3591708	Shoot apex	21.066
	SRR3591709	Stem	14.152
	SRR3591710	White floral bud	28.218
	SRR3591711	White flower	30.655
	SRR3591712	Green floral bud	25.161
	SRR3591713	Yellow flower	27.833
SRP173429	SRR8316895	Juvenile bud stage	14.104
	SRR8316896	Juvenile bud stage	22.109
	SRR8316897	Juvenile bud stage	10.570
	SRR8316894	Third green stage	8.083
	SRR8316900	Third green stage	20.814
	SRR8316901	Third green stage	18.913
	SRR8316898	Complete white stage	8.023
	SRR8316899	Complete white stage	24.156
	SRR8316903	Complete white stage	13.488
	SRR8316902	Silver flowering stage	10.648
	SRR8316904	Silver flowering stage	17.155
	SRR8316905	Silver flowering stage	5.106
	SRR8316906	Gold flowering stage	17.254
	SRR8316907	Gold flowering stage	19.817
	SRR8316908	Gold flowering stage	14.453
SRP132670	SRR6706286	Control	14.953
	SRR6706287	Light intensity 50%	17.163
	SRR6706288	Light intensity 20%	19.775
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.573
	CNS0095593	Slightly white alabastrum(diploid) 2	13.910
	CNS0095594	Slightly white alabastrum(diploid) 3	16.768
	CNS0095595	Whole white alabastrum(diploid) 2	15.514
	CNS0095596	Whole white alabastrum(diploid) 3	15.100
	CNS0095597	Whole white alabastrum(diploid) 4	12.456
	CNS0095598	Silvery flower (diploied) 1	16.524
	CNS0095599	Silvery flower (diploied) 2	17.655
	CNS0095600	Silvery flower (diploied) 3	17.269
	CNS0095601	Golden flower (diploid) 1	13.566
	CNS0095602	Golden flower (diploid) 2	17.091
	CNS0095603	Golden flower (diploid) 3	16.847
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.746
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.350
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.747
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.431
	CNS0095610	Silvery flower (tetraploid) 1	17.630
	CNS0095611	Silvery flower (tetraploid) 2	16.331
	CNS0095612	Silvery flower (tetraploid) 3	11.151
	CNS0095613	Golden flower (tetraploid) 1	6.308
	CNS0095614	Golden flower (tetraploid) 2	14.211
	CNS0095615	Golden flower (tetraploid) 3	7.281
CRA001975	CRR073297	Stem 1	22.946
	CRR073298	Stem 2	21.244
	CRR073299	Stem 3	22.366
	CRR073300	Leaf 1	31.000
	CRR073301	Leaf 2	21.987
	CRR073302	Leaf 3	18.695
	CRR073303	Juvenile bud 1	25.051
	CRR073304	Juvenile bud 2	19.458
	CRR073305	Juvenile bud 3	27.879
	CRR073306	Third green 1	10.937
	CRR073307	Third green 2	7.127
	CRR073308	Third green 3	10.423
	CRR073309	Second white 1	7.865
	CRR073310	Second white 2	13.154
	CRR073311	Second white 3	14.481
	CRR073312	Silver flowering 1	17.813
	CRR073313	Silver flowering 2	15.418
	CRR073314	Silver flowering 3	12.700
	CRR073315	Gold flowering 1	15.684
	CRR073316	Gold flowering 2	18.913
	CRR073317	Gold flowering 3	11.723
	CRR073318	Tawny withering 1	14.511
	CRR073319	Tawny withering 2	15.354
	CRR073320	Tawny withering 3	19.782