Detail information of GWHGAAZE032397


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074033.10PREDICTED: probable methylenetetrahydrofolate reductase [Sesamum indicum]
COGYP_112676.12E-695,10-methylenetetrahydrofolate reductase
Swissprottr|O80585|MTHR2_ARATH0Methylenetetrahydrofolate reductase 2
trEMBLtr|J7EQ04|J7EQ04_NICSY0Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}
TAIR10AT2G44160.10methylenetetrahydrofolate reductase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene860859869298-
GWHAAZE00000021mRNA860859869298-
GWHAAZE00000021exon860859860936-
GWHAAZE00000021exon861595861971-
GWHAAZE00000021exon863160863337-
GWHAAZE00000021exon863661863741-
GWHAAZE00000021exon864396864507-
GWHAAZE00000021exon865429865529-
GWHAAZE00000021exon865625865798-
GWHAAZE00000021exon866329866502-
GWHAAZE00000021exon867211867293-
GWHAAZE00000021exon867438867498-
GWHAAZE00000021exon868894869298-
GWHAAZE00000021CDS868894869298-
GWHAAZE00000021CDS867438867498-
GWHAAZE00000021CDS867211867293-
GWHAAZE00000021CDS866329866502-
GWHAAZE00000021CDS865625865798-
GWHAAZE00000021CDS865429865529-
GWHAAZE00000021CDS864396864507-
GWHAAZE00000021CDS863661863741-
GWHAAZE00000021CDS863160863337-
GWHAAZE00000021CDS861595861971-
GWHAAZE00000021CDS860859860936-
Transcript Sequence

Network for GWHGAAZE032397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02219.18MTHFR113024.30E-124
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00297metF, MTHFR Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Carbon fixation pathways in prokaryotesmap00720
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0006555biological_processmethionine metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0004489molecular_functionmethylenetetrahydrofolate reductase (NAD(P)H) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf438.694
SRR3591706second leaf399.660
SRR3591707mature leaf133.461
SRR3591708Shoot apex292.273
SRR3591709Stem737.262
SRR3591710White floral bud93.962
SRR3591711White flower89.412
SRR3591712Green floral bud265.227
SRR3591713Yellow flower58.688
SRP173429 SRR8316895Juvenile bud stage 284.696
SRR8316896Juvenile bud stage 275.398
SRR8316897Juvenile bud stage 137.474
SRR8316894Third green stage 108.161
SRR8316900Third green stage 318.218
SRR8316901Third green stage 278.694
SRR8316898Complete white stage 57.305
SRR8316899Complete white stage 242.021
SRR8316903Complete white stage 86.242
SRR8316902Silver flowering stage30.380
SRR8316904Silver flowering stage44.539
SRR8316905Silver flowering stage21.688
SRR8316906Gold flowering stage 97.211
SRR8316907Gold flowering stage 80.479
SRR8316908Gold flowering stage 153.609
SRP132670SRR6706286Control207.752
SRR6706287Light intensity 50%241.095
SRR6706288Light intensity 20%269.100
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1176.850
CNS0095593Slightly white alabastrum(diploid) 2168.528
CNS0095594Slightly white alabastrum(diploid) 3146.263
CNS0095595Whole white alabastrum(diploid) 2143.651
CNS0095596Whole white alabastrum(diploid) 3148.054
CNS0095597Whole white alabastrum(diploid) 4124.528
CNS0095598Silvery flower (diploied) 1114.862
CNS0095599Silvery flower (diploied) 2120.616
CNS0095600Silvery flower (diploied) 369.428
CNS0095601Golden flower (diploid) 161.917
CNS0095602Golden flower (diploid) 285.648
CNS0095603Golden flower (diploid) 383.766
CNS0095604Slightly white alabastrum(tetraploid) 1228.398
CNS0095605Slightly white alabastrum(tetraploid) 2185.199
CNS0095606Slightly white alabastrum(tetraploid) 3480.895
CNS0095607Whole white alabastrum(tetraploid) 1130.162
CNS0095608Whole white alabastrum(tetraploid) 2100.694
CNS0095609Whole white alabastrum(tetraploid) 3296.067
CNS0095610Silvery flower (tetraploid) 149.176
CNS0095611Silvery flower (tetraploid) 234.383
CNS0095612Silvery flower (tetraploid) 323.414
CNS0095613Golden flower (tetraploid) 130.597
CNS0095614Golden flower (tetraploid) 261.308
CNS0095615Golden flower (tetraploid) 315.141
CRA001975CRR073297Stem 1343.886
CRR073298Stem 2321.932
CRR073299Stem 3394.968
CRR073300Leaf 1328.373
CRR073301Leaf 2289.512
CRR073302Leaf 3335.236
CRR073303Juvenile bud 1340.619
CRR073304Juvenile bud 2353.826
CRR073305Juvenile bud 3316.706
CRR073306Third green 156.384
CRR073307Third green 248.577
CRR073308Third green 352.389
CRR073309Second white 124.849
CRR073310Second white 220.733
CRR073311Second white 321.109
CRR073312Silver flowering 161.185
CRR073313Silver flowering 263.493
CRR073314Silver flowering 362.519
CRR073315Gold flowering 159.477
CRR073316Gold flowering 270.951
CRR073317Gold flowering 377.457
CRR073318Tawny withering 1223.913
CRR073319Tawny withering 2153.922
CRR073320Tawny withering 3252.658