Detail information of GWHGAAZE032417


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007226886.10hypothetical protein PRUPE_ppa016615mg [Prunus persica]
Swissprottr|Q9SS86|LHTL4_ARATH3E-14Lysine histidine transporter-like 4
trEMBLtr|M5Y7X2|M5Y7X2_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ28085.1}
TAIR10AT5G16740.17E-126Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene19389341941220-
GWHAAZE00000021mRNA19389341941220-
GWHAAZE00000021exon19389341939473-
GWHAAZE00000021exon19400021940612-
GWHAAZE00000021exon19409681941220-
GWHAAZE00000021CDS19409681941220-
GWHAAZE00000021CDS19400021940612-
GWHAAZE00000021CDS19389341939473-
Transcript Sequence

Network for GWHGAAZE032417

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans694523.70E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15015SLC32A, VGAT GABAergic synapse map04727
Retrograde endocannabinoid signalingmap04723
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf1.884
SRR3591707mature leaf12.594
SRR3591708Shoot apex0.000
SRR3591709Stem2.091
SRR3591710White floral bud0.934
SRR3591711White flower5.603
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.031
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.252
SRR8316901Third green stage 0.268
SRR8316898Complete white stage 0.209
SRR8316899Complete white stage 0.425
SRR8316903Complete white stage 0.591
SRR8316902Silver flowering stage0.342
SRR8316904Silver flowering stage0.592
SRR8316905Silver flowering stage0.098
SRR8316906Gold flowering stage 0.051
SRR8316907Gold flowering stage 0.063
SRR8316908Gold flowering stage 0.318
SRP132670SRR6706286Control0.307
SRR6706287Light intensity 50%0.306
SRR6706288Light intensity 20%0.186
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.022
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 13.412
CNS0095599Silvery flower (diploied) 21.451
CNS0095600Silvery flower (diploied) 30.201
CNS0095601Golden flower (diploid) 13.709
CNS0095602Golden flower (diploid) 21.236
CNS0095603Golden flower (diploid) 30.869
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.172
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.016
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.409
CNS0095611Silvery flower (tetraploid) 20.125
CNS0095612Silvery flower (tetraploid) 30.405
CNS0095613Golden flower (tetraploid) 10.654
CNS0095614Golden flower (tetraploid) 20.775
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.045
CRR073298Stem 20.042
CRR073299Stem 30.029
CRR073300Leaf 10.027
CRR073301Leaf 20.016
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.247
CRR073304Juvenile bud 20.069
CRR073305Juvenile bud 30.175
CRR073306Third green 10.122
CRR073307Third green 20.127
CRR073308Third green 30.237
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.086
CRR073315Gold flowering 136.006
CRR073316Gold flowering 223.898
CRR073317Gold flowering 355.878
CRR073318Tawny withering 180.419
CRR073319Tawny withering 2177.108
CRR073320Tawny withering 394.266