Detail information of GWHGAAZE032436


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006492822.12.25441E-69PREDICTED: 60S ribosomal protein L21-2-like [Citrus sinensis]
Swissprottr|Q9FDZ9|RL212_ARATH2E-6660S ribosomal protein L21-2
trEMBLtr|A0A067G5K5|A0A067G5K5_CITSI8E-70Uncharacterized protein {ECO:0000313|EMBL:KDO70857.1}
TAIR10AT1G57660.18E-53Translation protein SH3-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene23335552335706+
GWHAAZE00000021mRNA23335552335706+
GWHAAZE00000021exon23335552333683+
GWHAAZE00000021exon23354492335706+
GWHAAZE00000021CDS23335552333683+
GWHAAZE00000021CDS23354492335706+
Transcript Sequence

Network for GWHGAAZE032436

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01157.19Ribosomal_L21e1442.00E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02889RP-L21e, RPL21 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf703.820
SRR3591706second leaf265.862
SRR3591707mature leaf137.050
SRR3591708Shoot apex889.327
SRR3591709Stem349.465
SRR3591710White floral bud246.402
SRR3591711White flower284.679
SRR3591712Green floral bud568.898
SRR3591713Yellow flower166.698
SRP173429 SRR8316895Juvenile bud stage 280.109
SRR8316896Juvenile bud stage 387.890
SRR8316897Juvenile bud stage 193.422
SRR8316894Third green stage 171.788
SRR8316900Third green stage 587.830
SRR8316901Third green stage 534.826
SRR8316898Complete white stage 66.243
SRR8316899Complete white stage 447.262
SRR8316903Complete white stage 114.800
SRR8316902Silver flowering stage69.265
SRR8316904Silver flowering stage76.460
SRR8316905Silver flowering stage35.064
SRR8316906Gold flowering stage 123.413
SRR8316907Gold flowering stage 137.221
SRR8316908Gold flowering stage 178.461
SRP132670SRR6706286Control620.688
SRR6706287Light intensity 50%608.543
SRR6706288Light intensity 20%648.577
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1539.859
CNS0095593Slightly white alabastrum(diploid) 2674.671
CNS0095594Slightly white alabastrum(diploid) 3517.649
CNS0095595Whole white alabastrum(diploid) 2492.441
CNS0095596Whole white alabastrum(diploid) 3564.334
CNS0095597Whole white alabastrum(diploid) 4365.298
CNS0095598Silvery flower (diploied) 1250.769
CNS0095599Silvery flower (diploied) 2224.492
CNS0095600Silvery flower (diploied) 3152.006
CNS0095601Golden flower (diploid) 1199.803
CNS0095602Golden flower (diploid) 2167.964
CNS0095603Golden flower (diploid) 3168.324
CNS0095604Slightly white alabastrum(tetraploid) 1481.229
CNS0095605Slightly white alabastrum(tetraploid) 2480.309
CNS0095606Slightly white alabastrum(tetraploid) 3582.020
CNS0095607Whole white alabastrum(tetraploid) 1263.803
CNS0095608Whole white alabastrum(tetraploid) 2252.149
CNS0095609Whole white alabastrum(tetraploid) 3447.674
CNS0095610Silvery flower (tetraploid) 1137.916
CNS0095611Silvery flower (tetraploid) 2120.481
CNS0095612Silvery flower (tetraploid) 397.709
CNS0095613Golden flower (tetraploid) 183.804
CNS0095614Golden flower (tetraploid) 2118.100
CNS0095615Golden flower (tetraploid) 374.996
CRA001975CRR073297Stem 1462.162
CRR073298Stem 2484.682
CRR073299Stem 3507.731
CRR073300Leaf 1470.403
CRR073301Leaf 2527.461
CRR073302Leaf 3674.552
CRR073303Juvenile bud 1452.123
CRR073304Juvenile bud 2355.104
CRR073305Juvenile bud 3362.598
CRR073306Third green 169.941
CRR073307Third green 268.139
CRR073308Third green 379.637
CRR073309Second white 168.625
CRR073310Second white 251.244
CRR073311Second white 327.436
CRR073312Silver flowering 154.762
CRR073313Silver flowering 287.304
CRR073314Silver flowering 346.455
CRR073315Gold flowering 1168.968
CRR073316Gold flowering 2171.966
CRR073317Gold flowering 3173.732
CRR073318Tawny withering 1409.741
CRR073319Tawny withering 2349.460
CRR073320Tawny withering 3351.560