Gene detail

Detail information of GWHGAAZE032440

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003553436.1	0	PREDICTED: probable protein kinase At2g41970-like [Glycine max]
COG	YP_007201433.1	1E-17	protein kinase family protein
Swissprot	tr\|P93749\|Y2197_ARATH	0	Probable protein kinase At2g41970
trEMBL	tr\|I1N9B1\|I1N9B1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G33180.1}
TAIR10	AT2G41970.1	2E-159	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2371427	2375917	-
GWHAAZE00000021	mRNA	2371427	2375917	-
GWHAAZE00000021	exon	2375755	2375917	-
GWHAAZE00000021	exon	2374913	2375117	-
GWHAAZE00000021	exon	2374167	2374411	-
GWHAAZE00000021	exon	2373942	2374068	-
GWHAAZE00000021	exon	2373123	2373396	-
GWHAAZE00000021	exon	2373008	2373046	-
GWHAAZE00000021	exon	2372708	2372840	-
GWHAAZE00000021	exon	2372261	2372347	-
GWHAAZE00000021	exon	2371427	2371540	-
GWHAAZE00000021	five_prime_UTR	2375755	2375917	-
GWHAAZE00000021	five_prime_UTR	2375007	2375117	-
GWHAAZE00000021	CDS	2374913	2375006	-
GWHAAZE00000021	CDS	2374167	2374411	-
GWHAAZE00000021	CDS	2373942	2374068	-
GWHAAZE00000021	CDS	2373123	2373396	-
GWHAAZE00000021	CDS	2373008	2373046	-
GWHAAZE00000021	CDS	2372708	2372840	-
GWHAAZE00000021	CDS	2372261	2372347	-
GWHAAZE00000021	CDS	2371427	2371540	-

Transcript Sequence
>GWHTAAZE032478 GCCCCAAAAGAGAGGAGAGAAACAGAGACATGCGTCTGTCTTCGTTTCTCTCTCTATTTCCATAACTATTCTATCAAACCCCTCTCTATCTCTCTCTTCTTCCCCGGATTCAATTTTTGGGTTTAGCTTTCTTCATTTTTTCAAAATCTAGACGTGGGTTTAGGTTAAATTGTCTGCATTGAAGGAATTCATCTGATAAAATACACACAAGTATTCTCTTCATGGTTTATCCAATATAGCTTCTCAGAGATTTATTTGCGGGTAGGCTTGAAATATGATGTGCTGCGGAGGTACTGAAGAGGAGGAAACCGGCGGTCAGCCTGCAAATCAATACCAAGCTCCACCTAGAACCGGGCTCCCAAGTGCAGGCAGTCAAAGAGGAGAACCAAGAAATGCAAGAAATGCTCCTCCAAAAATTTTACCTATTGAAACACCAGCTTTATCATTGGATGAGTTAAATAGGATGACCGGCAACTTTGGTCAAAAAGCTTTGATTGGAGAAGGTTCTTATGGTCGTGTTTTCTATGCCAAGTTAAGCAATGGCGATCCGGCAGCAGTAAAGAAGCTCGACACCAGTTCTTCAGCAGAACCTGACAATGATTTTGCAGCTCAGCTGTCGGTAGTTTCAAGACTAAAGAATGACTATTTTGTGGAGTTGCTTGCTTATTGCTTGGAGGCAAATAATCGGATCTTGGTATATCAATATGCAACAATGGGTTCTTTACATGATGTATTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCCGGTCCAATACTAAATTGGAGCCAGAGAGTTAAAATTGCTTTTGGAGCAGCGAAAGGCCTTGAGTATTTACACGAAAAGGTTCAACCATCAATTGTTCATCGTGATGTCAGATCCAGCAATGTACTATTGTTTGACGATTTTCATACCAAAATAGCCGATTTCAACTTAACAAACCAGTCTTCTGATACTGCTGCTCGGCTGCATTCAACAAGAGTTTTGGGTACATTTGGCTACCATGCACCAGAGTGTGTTTGGTTCAGCATTTGGGTGGATTTGAGGGTAAGGTATGCAATGACAGGGCAGATAACTCAGAAAAGTGATGTTTATAGTTTTGGAGTTGTACTTTTAGAGCTCTTAACGGGAAGAAAACCAGTTGACCATACAATGCCCAAAGGACAGCAGAGCCTCGTTACTTGGGCAACTCCAAGACTTAGTGAAGACAAAGTAAAGCAATGTGTGGATCCGAAGCTAAATGATGAGTACCCACCAAAGGCAATTGCTAAGATGGGAGCAGTGGCGGCACTTTGTGTTCAATACGAAGCAGATTTTCGGCCAAATATGACGATTGTTGTCAAGGCCCTGCAACCACTTGTTAACTCAAAACCAGCGGGTCCTTGA

Network for GWHGAAZE032440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	72	359	4.20E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.087
	SRR3591706	second leaf	0.902
	SRR3591707	mature leaf	0.104
	SRR3591708	Shoot apex	0.896
	SRR3591709	Stem	0.073
	SRR3591710	White floral bud	15.083
	SRR3591711	White flower	0.519
	SRR3591712	Green floral bud	2.570
	SRR3591713	Yellow flower	0.247
SRP173429	SRR8316895	Juvenile bud stage	2.445
	SRR8316896	Juvenile bud stage	3.929
	SRR8316897	Juvenile bud stage	2.210
	SRR8316894	Third green stage	1.561
	SRR8316900	Third green stage	5.962
	SRR8316901	Third green stage	4.293
	SRR8316898	Complete white stage	0.325
	SRR8316899	Complete white stage	2.252
	SRR8316903	Complete white stage	0.168
	SRR8316902	Silver flowering stage	0.401
	SRR8316904	Silver flowering stage	0.968
	SRR8316905	Silver flowering stage	0.320
	SRR8316906	Gold flowering stage	1.035
	SRR8316907	Gold flowering stage	0.713
	SRR8316908	Gold flowering stage	0.261
SRP132670	SRR6706286	Control	3.701
	SRR6706287	Light intensity 50%	4.251
	SRR6706288	Light intensity 20%	3.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.942
	CNS0095593	Slightly white alabastrum(diploid) 2	3.363
	CNS0095594	Slightly white alabastrum(diploid) 3	4.148
	CNS0095595	Whole white alabastrum(diploid) 2	4.998
	CNS0095596	Whole white alabastrum(diploid) 3	6.945
	CNS0095597	Whole white alabastrum(diploid) 4	8.581
	CNS0095598	Silvery flower (diploied) 1	0.968
	CNS0095599	Silvery flower (diploied) 2	3.252
	CNS0095600	Silvery flower (diploied) 3	2.463
	CNS0095601	Golden flower (diploid) 1	2.440
	CNS0095602	Golden flower (diploid) 2	2.399
	CNS0095603	Golden flower (diploid) 3	1.887
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.431
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.604
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.291
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.710
	CNS0095610	Silvery flower (tetraploid) 1	0.398
	CNS0095611	Silvery flower (tetraploid) 2	2.774
	CNS0095612	Silvery flower (tetraploid) 3	3.326
	CNS0095613	Golden flower (tetraploid) 1	0.827
	CNS0095614	Golden flower (tetraploid) 2	0.534
	CNS0095615	Golden flower (tetraploid) 3	2.360
CRA001975	CRR073297	Stem 1	4.124
	CRR073298	Stem 2	1.997
	CRR073299	Stem 3	2.221
	CRR073300	Leaf 1	3.169
	CRR073301	Leaf 2	3.838
	CRR073302	Leaf 3	2.377
	CRR073303	Juvenile bud 1	3.702
	CRR073304	Juvenile bud 2	4.429
	CRR073305	Juvenile bud 3	2.317
	CRR073306	Third green 1	3.893
	CRR073307	Third green 2	3.539
	CRR073308	Third green 3	3.111
	CRR073309	Second white 1	0.727
	CRR073310	Second white 2	1.165
	CRR073311	Second white 3	0.755
	CRR073312	Silver flowering 1	2.174
	CRR073313	Silver flowering 2	3.875
	CRR073314	Silver flowering 3	1.268
	CRR073315	Gold flowering 1	4.053
	CRR073316	Gold flowering 2	2.295
	CRR073317	Gold flowering 3	1.320
	CRR073318	Tawny withering 1	2.901
	CRR073319	Tawny withering 2	2.475
	CRR073320	Tawny withering 3	2.703