Gene detail

Detail information of GWHGAAZE032473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275246.1	0	PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera]
trEMBL	tr\|A5BGN8\|A5BGN8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83222.1}
TAIR10	AT5G06810.1	2E-143	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2931205	2932965	+
GWHAAZE00000021	mRNA	2931205	2932965	+
GWHAAZE00000021	exon	2931205	2932965	+
GWHAAZE00000021	CDS	2931205	2932965	+

Transcript Sequence
>GWHTAAZE032511 ATGAATCACTTGCAGAAACTAAGAATATCATCTGTTCTCAAATGGGTTTCCTTTAATTTCTCTAAAACCCCTGTTTGGGAAAATGGGTCATGCTCATACTACCACATTCCCCAAAACCCTAGATTCTATAGCTCTAAAAGAGCTGCTAAGGCTGATAATGGTCAAGATTTAGATGAAACCAACACTGTAGAAGGGGGAAATGGAGGTAGATTAATATCTCGCGTGGATAGACAAGAAGCTCAAGCTGCTTTATTAGAATACCTTCACTCCACTAGAAGTTTACAGTTTATGGACGCAGAAAATATGAGCCGAAATTCGCCGCTTTTTCTAGATAAGTTGTTGAAAAAGATTGATAACGAAATGGATGATGTTGGGAGATCGATAACCCGGTTCTTGCGCTACCATCCCATTAATGAATTCGAGCCCTTTTTCGAGAGTATGGGTTTGAAACCTAATGAGTACTCTCCGCTTCTACCACGTAATCTCATGTTTTTGAACGACGATGAGAGGTTGCTAGAGAATTATTACGTTTTGCGTGATTATGGGATTGAAAGAAATAAGATAGGAAAGATTTATAAAGAGGTGGCCGAGGCTTTTAGATATGATTATGGGGTTTTGCTATTGAAGCTTCAAACATTCGAAAAAATGGGCCTCACTCGGTCGATTGTAGTCAAGATTGTTGCTTCAAGTCCCTACGTTTTGATTGGTAAAGCGAATATAGTGCTTTTTAAGGTTTTAGAAAAGTTGAAGAGTATTGGGATTCACTATGGTTGGATTGAGGAACAATTGTTGGAGGGAAATTCTTACAATTGGGGCCGTATGCTCGAGCTTTTATGCTTGCTTAACAAGATTGGGTGTTCTAAAGAGCAACTAAAAGGATTAATTGTGCAAAATCCGGGACTACTATTTGAGGGATCGGGTAGTACAACCAGTTTGCTGATTGGGTTCTTAGTGAAATTCGGAGCCACATCGAATGACCTAAGTTCTACATTTATAAATTTTCCCCAACTCGAAGTTGAGAAATATTTTTTGAATTTGAGGCAATGCTATCACTTTCTTGTGGAAGTCGAGATGAACGAACAAGAGATTGGGAGGATTGTTCGTTCGCATCCGGGGTTGCTCGGTTCGTGTTATTTAAAGAAACTCAACAGCTTATTGGTTTGCTTAAACACGGGTAGAAAGCGACTTTGCGAAATTATCATTAAGAACCCACAAGAATTGAGAAACTGGGTTCATGGATCGAGAGTAAAACCATTGCCAAAGACAAGGGGAGATAAGCTAGTGGTGGAGAAGACAAAGTTCTTGTTGGGATTAGGGTTTATCGAAAACTCGACCGAAATGGAAAAAGCCCTCAAGTTGTTTCGAGGGAAAGGGGCTGAACTTCAGGAGAGATTCAATTGTTTCGTCAATGCTGGTTTGACCAGTACGGATGTAACAGAAATGCTTAAAAATGCGCCTCAAATTATTAACCAAACCAAAGAAGTGATTGAAATGAAGATTGATTATCTTGTAAACGAATTGGGTCAACCCATTTCTTCTTTAATTGCATTCCCGGCCTATATTTCGTATACAACTCAGAGGGTCAGCCTTAGGTATTCAATGTATAATTGGCTCAAAGATCAAGGGAGAGTGGATCCAAATTTGGCTTTGAGTACTATTGTTGCATGTTCGGATAAAATATTCATAAAGCAATATGTAAATCACCACCCTAGCGGACTTGTAGTTTGGGAAAAGTTGAAGAAACAGATTTATTCTGAATGA

Network for GWHGAAZE032473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	143	241	6.80E-06
PF02536.15	mTERF	279	443	2.40E-13
PF02536.15	mTERF	459	561	4.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.867
	SRR3591706	second leaf	0.949
	SRR3591707	mature leaf	0.837
	SRR3591708	Shoot apex	2.741
	SRR3591709	Stem	0.779
	SRR3591710	White floral bud	0.511
	SRR3591711	White flower	2.023
	SRR3591712	Green floral bud	1.105
	SRR3591713	Yellow flower	0.616
SRP173429	SRR8316895	Juvenile bud stage	0.932
	SRR8316896	Juvenile bud stage	0.853
	SRR8316897	Juvenile bud stage	0.511
	SRR8316894	Third green stage	0.422
	SRR8316900	Third green stage	1.796
	SRR8316901	Third green stage	1.244
	SRR8316898	Complete white stage	0.367
	SRR8316899	Complete white stage	1.725
	SRR8316903	Complete white stage	0.673
	SRR8316902	Silver flowering stage	0.713
	SRR8316904	Silver flowering stage	0.639
	SRR8316905	Silver flowering stage	0.180
	SRR8316906	Gold flowering stage	0.699
	SRR8316907	Gold flowering stage	0.465
	SRR8316908	Gold flowering stage	0.538
SRP132670	SRR6706286	Control	0.599
	SRR6706287	Light intensity 50%	0.481
	SRR6706288	Light intensity 20%	0.674
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.005
	CNS0095593	Slightly white alabastrum(diploid) 2	2.000
	CNS0095594	Slightly white alabastrum(diploid) 3	1.557
	CNS0095595	Whole white alabastrum(diploid) 2	1.113
	CNS0095596	Whole white alabastrum(diploid) 3	0.560
	CNS0095597	Whole white alabastrum(diploid) 4	0.950
	CNS0095598	Silvery flower (diploied) 1	2.364
	CNS0095599	Silvery flower (diploied) 2	1.142
	CNS0095600	Silvery flower (diploied) 3	1.485
	CNS0095601	Golden flower (diploid) 1	1.865
	CNS0095602	Golden flower (diploid) 2	0.986
	CNS0095603	Golden flower (diploid) 3	0.946
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.562
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.974
	CNS0095610	Silvery flower (tetraploid) 1	1.048
	CNS0095611	Silvery flower (tetraploid) 2	1.403
	CNS0095612	Silvery flower (tetraploid) 3	0.944
	CNS0095613	Golden flower (tetraploid) 1	0.415
	CNS0095614	Golden flower (tetraploid) 2	0.773
	CNS0095615	Golden flower (tetraploid) 3	0.215
CRA001975	CRR073297	Stem 1	0.424
	CRR073298	Stem 2	0.653
	CRR073299	Stem 3	0.710
	CRR073300	Leaf 1	0.478
	CRR073301	Leaf 2	0.301
	CRR073302	Leaf 3	0.113
	CRR073303	Juvenile bud 1	0.300
	CRR073304	Juvenile bud 2	0.323
	CRR073305	Juvenile bud 3	0.315
	CRR073306	Third green 1	0.208
	CRR073307	Third green 2	0.131
	CRR073308	Third green 3	0.244
	CRR073309	Second white 1	0.495
	CRR073310	Second white 2	0.420
	CRR073311	Second white 3	0.338
	CRR073312	Silver flowering 1	0.161
	CRR073313	Silver flowering 2	0.219
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.195
	CRR073316	Gold flowering 2	0.381
	CRR073317	Gold flowering 3	0.190
	CRR073318	Tawny withering 1	0.546
	CRR073319	Tawny withering 2	0.424
	CRR073320	Tawny withering 3	0.847