Gene detail

Detail information of GWHGAAZE032474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267898.1	2.445E-123	promoter-binding protein SPL9 [Vitis vinifera]
Swissprot	tr\|Q700W2\|SPL9_ARATH	2E-57	Squamosa promoter-binding-like protein 9
trEMBL	tr\|D6QZ29\|D6QZ29_VITVI	9E-124	Promoter-binding protein SPL9 {ECO:0000313\|EMBL:ADG36380.1}
TAIR10	AT2G42200.1	2E-43	squamosa promoter binding protein-like 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2967210	2970472	+
GWHAAZE00000021	mRNA	2967210	2970472	+
GWHAAZE00000021	exon	2967210	2967565	+
GWHAAZE00000021	exon	2969244	2969383	+
GWHAAZE00000021	exon	2969931	2970472	+
GWHAAZE00000021	CDS	2967210	2967565	+
GWHAAZE00000021	CDS	2969244	2969383	+
GWHAAZE00000021	CDS	2969931	2970472	+

Transcript Sequence
>GWHTAAZE032512 CCAAAAATGGAAACGGGTTCAAGCTCTTCTTCTTCAAATTCGCCTGAATCTCTCAATGGGTTGAAATTTGGCAAGAAAATCTACTTTGAGGATGTGGGTGTTGGAATTCCGGCCAAATCTTGTGGTGGGTCGCTGTCAGCCGGAGGGCTGCCTCCGCCGCCGACGCAGGTGAAGAGGGGGAGGGGGGTGGTCGTACAGGGTGGGCAGCCACCTAGGTGCCAGGTGGAAGGGTGTAAAGTAGATCTGAGCGATGCTAAGTCCTACTATTCAAGGCATAAAGTTTGTGGTACGCACTCAAAGTCACCTTTGGTTATTGTTGGTGGCCTTGAGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATCTGCTGCCTGAGTTTGACCAAGGAAAAAGAAGTTGCCGTAGGCGCCTAGCTGGCCATAACGAGCGTCGTAGGAAGCCGCCACCTGGATCTATGTTGTCCACGCGCTATGGAATTCTTGCATCATCTATCTTGGAGAAAAACAGCCGAGCTGGAGGATTTCTGGTGGACTTCACTACTTACCCCAGGCTAACAAGAGGATCCGAACCTGGGTCCGGGAGTGGGTCCCTCTATCCAGGTCCCACGTTTTATCCCGGATCATCCTACACCGAGGCCTCCGACTCCAACTGTGCTCTCTCTCTTCTGTCAAATCAGCCAAGAACCTCCCACCAGACATCAAGTCCCGGGTCAAACTACTTACTTAACATGGACGGTGTAAACATGGTTCAACCAGCAACCACCCATGGTGTTGCACCACCTAATCATTTCTCATGGGGTCTTAAAGGTAATGAGGCTAACAGCGGTCAATTTTCTGGCCCTGCTTGGGATAGCGAAGCTAGTAGCGGATCCCACGAGCTGCTGCCCGATTTGGGTCTCGGTCAGTTTTCTGGGCAGCCAGTCACTGGTCAATACTCTGGCGAGCTCGAGTTGGCCGGACAGAGTGGAAGGCAGTATATGGAACTTGAGCATTCGAGGGCTTATGATTCTTCCACTCAGCATATGCACTGGCCACTGTGA

Network for GWHGAAZE032474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	73	146	1.40E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.862
	SRR3591706	second leaf	15.858
	SRR3591707	mature leaf	0.781
	SRR3591708	Shoot apex	23.587
	SRR3591709	Stem	20.960
	SRR3591710	White floral bud	2.801
	SRR3591711	White flower	0.639
	SRR3591712	Green floral bud	26.909
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	11.857
	SRR8316896	Juvenile bud stage	5.826
	SRR8316897	Juvenile bud stage	7.806
	SRR8316894	Third green stage	5.139
	SRR8316900	Third green stage	8.587
	SRR8316901	Third green stage	8.407
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.567
	SRR8316903	Complete white stage	0.379
	SRR8316902	Silver flowering stage	0.034
	SRR8316904	Silver flowering stage	0.016
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.119
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.618
	SRR6706287	Light intensity 50%	10.078
	SRR6706288	Light intensity 20%	11.665
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.397
	CNS0095593	Slightly white alabastrum(diploid) 2	11.389
	CNS0095594	Slightly white alabastrum(diploid) 3	6.755
	CNS0095595	Whole white alabastrum(diploid) 2	10.410
	CNS0095596	Whole white alabastrum(diploid) 3	13.278
	CNS0095597	Whole white alabastrum(diploid) 4	5.602
	CNS0095598	Silvery flower (diploied) 1	2.362
	CNS0095599	Silvery flower (diploied) 2	0.811
	CNS0095600	Silvery flower (diploied) 3	0.214
	CNS0095601	Golden flower (diploid) 1	0.213
	CNS0095602	Golden flower (diploid) 2	0.037
	CNS0095603	Golden flower (diploid) 3	0.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.929
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.760
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.470
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.047
	CNS0095610	Silvery flower (tetraploid) 1	0.401
	CNS0095611	Silvery flower (tetraploid) 2	0.466
	CNS0095612	Silvery flower (tetraploid) 3	0.351
	CNS0095613	Golden flower (tetraploid) 1	0.100
	CNS0095614	Golden flower (tetraploid) 2	0.078
	CNS0095615	Golden flower (tetraploid) 3	0.100
CRA001975	CRR073297	Stem 1	20.050
	CRR073298	Stem 2	14.770
	CRR073299	Stem 3	16.309
	CRR073300	Leaf 1	12.136
	CRR073301	Leaf 2	14.704
	CRR073302	Leaf 3	10.783
	CRR073303	Juvenile bud 1	6.115
	CRR073304	Juvenile bud 2	1.958
	CRR073305	Juvenile bud 3	7.134
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.019
	CRR073310	Second white 2	0.066
	CRR073311	Second white 3	0.026
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.722
	CRR073316	Gold flowering 2	3.423
	CRR073317	Gold flowering 3	0.552
	CRR073318	Tawny withering 1	6.278
	CRR073319	Tawny withering 2	2.622
	CRR073320	Tawny withering 3	5.692