Gene detail

Detail information of GWHGAAZE032492

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632695.1	1.0492E-148	PREDICTED: OTU domain-containing protein At3g57810 [Vitis vinifera]
Swissprot	tr\|Q8LBZ4\|OTU_ARATH	1E-93	OTU domain-containing protein At3g57810
trEMBL	tr\|A0A061EYB2\|A0A061EYB2_THECC	5E-139	Cysteine proteinases superfamily protein isoform 4 {ECO:0000313\|EMBL:EOY09417.1}
TAIR10	AT3G57810.3	2E-74	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3343848	3346555	-
GWHAAZE00000021	mRNA	3343848	3346555	-
GWHAAZE00000021	exon	3345979	3346555	-
GWHAAZE00000021	exon	3345350	3345471	-
GWHAAZE00000021	exon	3345030	3345070	-
GWHAAZE00000021	exon	3344810	3344908	-
GWHAAZE00000021	exon	3343848	3344242	-
GWHAAZE00000021	CDS	3345979	3346555	-
GWHAAZE00000021	CDS	3345350	3345471	-
GWHAAZE00000021	CDS	3345030	3345070	-
GWHAAZE00000021	CDS	3344810	3344908	-
GWHAAZE00000021	CDS	3344071	3344242	-
GWHAAZE00000021	three_prime_UTR	3343848	3344070	-

Transcript Sequence
>GWHTAAZE032530 ATGTTTTCTTCTCCCATCAGAGCATATGTGAAAAATGTGGTGCGCTTAACTGAGTGCATCCAAAGACAGATGAGAAACCAGGGTACCATATCCCAATCTCCATCGAGCAAATGTTGTTTCTCACTTTACACCGGACGCCCTAAAACAGATTACGTTAAAATGTCAATCTCGAGGGCAAATTCCTCTTCATCTTTTATTAGTTTTCAAGCGTTACAAGGACGCTGTTTTGGGTCTGTCAAGCAGGGGCATTCTTCAACCGTTAAAAGGAAAGTTAGTTTCAGATGCCCTCGGAAGACGTGCCTTGATATTTCAGTGTGGTCCCAAAACATGAATGTAAGACTATTAGTCCCAAAAGAAGGAATAATCCCCAAAATCAAGTGTAGTGTGGGACCTGTATCGTTGCTTCGGGGATGTGCCTCTGCTGGCTTAGTTTTTGGACTATTTGTTTGCTATTCAACTTCTGGGCCGGTACATGCTCAAGTACTGCAGGCTAAGGAAAATGGGGAAGATGATTGTGATTCCCAAAATGGCAAAATTTCACACGGGAAGAAAGTTTACAGAGACTATTCCGTTATTGGCATACCTGGAGATGGCAGATGTTTATTTCGCTCAGTTGCTCATGGAGCTACATTACGATCGGGAAAGCCTTCTCCGAATGAGAGCCTCCAAAGAGAATTAGCAGATGATTTACGGGCTAGAGTGGCAGATGAATTTATCAAAAGAAGGGAGGAGACGGAATGGTTCATAGAAGGTGACTTCGACTCATACGTCTCACAAATAAGGAAAGCACACGTATGGGGAGGGGAACCTGAATTGCTTATGGCTTCTCATGTTCTCCGGATGCCGATAACAGTGTACATGTATGATAAAGAGTCAGGTGGACTGATATCCATAGCCGAGTATGGGCAAGAATACGACAAGCAGAATCCCATAAAGGTTCTTTATCATGGTTTTGGCCACTATGATGCGTTGCTAATTCCAGGTAAGAAGAGTGCTAAATCGAGGCTCTAGCACTTGGGCATTTGAGTTTGAGTTTGATGATGGTTAATGATTGTATATCTTGAAGAAGAAAGGATGCTCTAACTAAATAAAGACCTGGTTGTTAAGAGGGGTGTTTTGGTCTAAATTATACCACGACGGTTCCTTTGTTATCTGTATGTTGTGATAACAAGAACGATAGGACCGACCCTGACGTATATAAGACCAGGCCATTTGATATTAAGGCCTTTTGTTA

Network for GWHGAAZE032492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02338.20	OTU	195	321	5.60E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.707
	SRR3591706	second leaf	16.725
	SRR3591707	mature leaf	24.842
	SRR3591708	Shoot apex	18.333
	SRR3591709	Stem	20.835
	SRR3591710	White floral bud	16.062
	SRR3591711	White flower	29.800
	SRR3591712	Green floral bud	14.179
	SRR3591713	Yellow flower	36.020
SRP173429	SRR8316895	Juvenile bud stage	13.546
	SRR8316896	Juvenile bud stage	20.004
	SRR8316897	Juvenile bud stage	10.132
	SRR8316894	Third green stage	7.410
	SRR8316900	Third green stage	22.637
	SRR8316901	Third green stage	16.662
	SRR8316898	Complete white stage	7.160
	SRR8316899	Complete white stage	25.948
	SRR8316903	Complete white stage	6.719
	SRR8316902	Silver flowering stage	5.162
	SRR8316904	Silver flowering stage	6.283
	SRR8316905	Silver flowering stage	3.070
	SRR8316906	Gold flowering stage	14.777
	SRR8316907	Gold flowering stage	10.401
	SRR8316908	Gold flowering stage	17.625
SRP132670	SRR6706286	Control	10.228
	SRR6706287	Light intensity 50%	8.904
	SRR6706288	Light intensity 20%	9.677
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.389
	CNS0095593	Slightly white alabastrum(diploid) 2	13.832
	CNS0095594	Slightly white alabastrum(diploid) 3	15.215
	CNS0095595	Whole white alabastrum(diploid) 2	15.384
	CNS0095596	Whole white alabastrum(diploid) 3	10.894
	CNS0095597	Whole white alabastrum(diploid) 4	9.805
	CNS0095598	Silvery flower (diploied) 1	19.882
	CNS0095599	Silvery flower (diploied) 2	16.076
	CNS0095600	Silvery flower (diploied) 3	18.826
	CNS0095601	Golden flower (diploid) 1	21.071
	CNS0095602	Golden flower (diploid) 2	20.705
	CNS0095603	Golden flower (diploid) 3	20.603
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.834
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.170
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.936
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.235
	CNS0095610	Silvery flower (tetraploid) 1	33.476
	CNS0095611	Silvery flower (tetraploid) 2	39.144
	CNS0095612	Silvery flower (tetraploid) 3	23.297
	CNS0095613	Golden flower (tetraploid) 1	22.779
	CNS0095614	Golden flower (tetraploid) 2	33.018
	CNS0095615	Golden flower (tetraploid) 3	18.107
CRA001975	CRR073297	Stem 1	14.200
	CRR073298	Stem 2	14.708
	CRR073299	Stem 3	12.161
	CRR073300	Leaf 1	11.139
	CRR073301	Leaf 2	11.957
	CRR073302	Leaf 3	11.371
	CRR073303	Juvenile bud 1	11.473
	CRR073304	Juvenile bud 2	7.671
	CRR073305	Juvenile bud 3	12.055
	CRR073306	Third green 1	1.809
	CRR073307	Third green 2	0.692
	CRR073308	Third green 3	1.220
	CRR073309	Second white 1	6.341
	CRR073310	Second white 2	4.315
	CRR073311	Second white 3	3.662
	CRR073312	Silver flowering 1	4.286
	CRR073313	Silver flowering 2	5.085
	CRR073314	Silver flowering 3	2.904
	CRR073315	Gold flowering 1	19.393
	CRR073316	Gold flowering 2	26.986
	CRR073317	Gold flowering 3	22.634
	CRR073318	Tawny withering 1	8.121
	CRR073319	Tawny withering 2	11.393
	CRR073320	Tawny withering 3	10.260