Detail information of GWHGAAZE032494


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007028901.11.57647E-82Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8VZ02|BH048_ARATH2E-51Transcription factor bHLH48
trEMBLtr|A0A061EXK6|A0A061EXK6_THECC6E-83Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOY09403.1}
TAIR10AT3G57800.22E-40basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene33847063390579+
GWHAAZE00000021mRNA33847063390579+
GWHAAZE00000021exon33847063385113+
GWHAAZE00000021exon33851933385321+
GWHAAZE00000021exon33854433385508+
GWHAAZE00000021exon33875313387602+
GWHAAZE00000021exon33892933389453+
GWHAAZE00000021exon33905313390579+
GWHAAZE00000021CDS33847063385113+
GWHAAZE00000021CDS33851933385321+
GWHAAZE00000021CDS33854433385508+
GWHAAZE00000021CDS33875313387602+
GWHAAZE00000021CDS33892933389453+
GWHAAZE00000021CDS33905313390579+
Transcript Sequence

Network for GWHGAAZE032494

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH1731977.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.394
SRR3591706second leaf146.861
SRR3591707mature leaf45.869
SRR3591708Shoot apex105.150
SRR3591709Stem39.428
SRR3591710White floral bud78.775
SRR3591711White flower30.920
SRR3591712Green floral bud136.701
SRR3591713Yellow flower17.666
SRP173429 SRR8316895Juvenile bud stage 70.887
SRR8316896Juvenile bud stage 90.703
SRR8316897Juvenile bud stage 36.966
SRR8316894Third green stage 67.517
SRR8316900Third green stage 203.782
SRR8316901Third green stage 203.028
SRR8316898Complete white stage 61.481
SRR8316899Complete white stage 522.932
SRR8316903Complete white stage 99.353
SRR8316902Silver flowering stage20.555
SRR8316904Silver flowering stage32.757
SRR8316905Silver flowering stage19.030
SRR8316906Gold flowering stage 47.031
SRR8316907Gold flowering stage 46.508
SRR8316908Gold flowering stage 48.513
SRP132670SRR6706286Control212.467
SRR6706287Light intensity 50%246.257
SRR6706288Light intensity 20%288.098
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.917
CNS0095593Slightly white alabastrum(diploid) 286.867
CNS0095594Slightly white alabastrum(diploid) 346.690
CNS0095595Whole white alabastrum(diploid) 280.007
CNS0095596Whole white alabastrum(diploid) 371.799
CNS0095597Whole white alabastrum(diploid) 471.831
CNS0095598Silvery flower (diploied) 141.023
CNS0095599Silvery flower (diploied) 238.717
CNS0095600Silvery flower (diploied) 344.733
CNS0095601Golden flower (diploid) 130.146
CNS0095602Golden flower (diploid) 234.338
CNS0095603Golden flower (diploid) 335.476
CNS0095604Slightly white alabastrum(tetraploid) 1108.913
CNS0095605Slightly white alabastrum(tetraploid) 281.572
CNS0095606Slightly white alabastrum(tetraploid) 3190.037
CNS0095607Whole white alabastrum(tetraploid) 166.934
CNS0095608Whole white alabastrum(tetraploid) 268.166
CNS0095609Whole white alabastrum(tetraploid) 3118.966
CNS0095610Silvery flower (tetraploid) 136.797
CNS0095611Silvery flower (tetraploid) 241.849
CNS0095612Silvery flower (tetraploid) 338.975
CNS0095613Golden flower (tetraploid) 121.213
CNS0095614Golden flower (tetraploid) 226.494
CNS0095615Golden flower (tetraploid) 320.059
CRA001975CRR073297Stem 1216.552
CRR073298Stem 2191.868
CRR073299Stem 3110.746
CRR073300Leaf 1363.736
CRR073301Leaf 2378.083
CRR073302Leaf 3244.641
CRR073303Juvenile bud 1312.698
CRR073304Juvenile bud 2232.285
CRR073305Juvenile bud 3379.479
CRR073306Third green 129.163
CRR073307Third green 222.396
CRR073308Third green 328.490
CRR073309Second white 19.026
CRR073310Second white 28.519
CRR073311Second white 37.820
CRR073312Silver flowering 16.139
CRR073313Silver flowering 24.921
CRR073314Silver flowering 37.504
CRR073315Gold flowering 151.584
CRR073316Gold flowering 243.937
CRR073317Gold flowering 339.264
CRR073318Tawny withering 139.256
CRR073319Tawny withering 229.813
CRR073320Tawny withering 339.879