Gene detail

Detail information of GWHGAAZE032503

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002526727.1	0	adenylosuccinate synthetase, putative [Ricinus communis]
COG	YP_003312705.1	2E-141	adenylosuccinate synthetase
Swissprot	tr\|B9SL58\|PURA2_RICCO	0	Adenylosuccinate synthetase 2, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03125} (Precursor)
trEMBL	tr\|A0A061F482\|A0A061F482_THECC	0	Adenylosuccinate synthetase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03125}
TAIR10	AT3G57610.1	0	adenylosuccinate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3606066	3610528	+
GWHAAZE00000021	mRNA	3606066	3610528	+
GWHAAZE00000021	exon	3606066	3606368	+
GWHAAZE00000021	exon	3607578	3608270	+
GWHAAZE00000021	exon	3609026	3609337	+
GWHAAZE00000021	exon	3610358	3610528	+
GWHAAZE00000021	CDS	3606066	3606368	+
GWHAAZE00000021	CDS	3607578	3608270	+
GWHAAZE00000021	CDS	3609026	3609337	+
GWHAAZE00000021	CDS	3610358	3610528	+

Transcript Sequence
>GWHTAAZE032541 ATGAACCTCTCTTCGTCTTTCAGACTCGACACCACCACAAACCCTACTTTAGCTCCTAAACAGCCCTTTAATCGCCGGAGCTTCACTCTCCACCACTACCACCGGAATAGCCTCGTCTGCTCTGCCAAGCCTGTCGCATCCTCCTCCTCATCCGTGGTGGCAAAAACGACTACTGACGTTCCCACTCGAATCGAAGCTCTGAGTCAGGTATCGGGGGTTTTGGGTTGTCAGTGGGGCGATGAAGGTAAAGGTAAGCTCGTTGATATCTTGGCCAAGCACTTCGATATCGTTGCTCGATGCCAGGGTGGGGCCAATGCTGGACACACTATATATAATGCTGAGGGGAAGAAGTTTGCGCTTCATCTTGTTCCCTCGGGGATTCTTAATGACGATACTATGTGTGTGATTGGAAATGGAGTTGTGGTGCACCTACCAGGATTATTTCAAGAAATTGATGGCCTTGAATCCAACGGAGTATCGTGCAAAGGAAGGATCTTGGTATCCGATCGTGCTCACTTATTATTTGATTTTCATCAAGAAGTGGACGGGCTTAGAGAAGCCGAGCTAGCTAAGTCATTCATCGGTACCACCAAGAGAGGGATTGGACCTTGCTACTCTAGTAAGGTTATTAGAAATGGCATTAGAGTAAGCGACTTGAGGCATATGGACACTTTTCCTCAGAAGCTTGATGTTTTATTATCGGATGCGGCTTCAAGATTTAAGGATTTTAAGTACCGCCCCGAGATGCTGAGGGAAAAAGTTGAAAAGTACAAGAGATTTTCCGAGAGGTTGGAGCCCTATATATCTGATACAGTGCATTTTATGCATGAATCCATCTCTCAAAAGAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGACATCGACTTTGGAACTTACCCCTTTGTAACTTCTTCTAGTCCCTCAGCTGGCGGAATCTGTACTGGTCTTGGTATTGCTCCTAGAGTCGTTGGCGATCTTGTAGGAGTGGTTAAAGCATACACCACAAGAGTTGGTTCGGGTCCTTTCCCAACAGAAATGTTGGGTAAAAATGGGGATGTTCTTAGGTTTGCTGGGCAGGAGTTTGGCACTACCACTGGTCGTCCTCGCCGTTGTGGCTGGCTTGATGTTGTGGCGCTTAAATATGTCTGTCAGATTAATGGCTTCTCTTCTTTGAATCTCACCAAACTTGATGTTTTGTCGGATCTAACTGAAATTCAGCTTGGTGTTTCCTACAAACATATTGATGGTACATCAATCCAATCATTCCCTGCCGATCTCCGCGTTCTTGAGCAATCAAAGGTGGAATACGAAACCATGCCCGGATGGCAGACTGATATTTCAAAGGTGAGAGACTACTCGGATCTGCCAAAGGCTGCACAAGAATACGTGGAAAGGATAGAAGAACTTGTCGGCATACCCGTCCATTACATTGGCGTTGGGCCAGGACGTGATGCCCTTATATACAAATAA

Network for GWHGAAZE032503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00709.22	Adenylsucc_synt	73	490	5.80E-174

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01939	purA, ADSS	Metabolic pathways	map01100
		Purine metabolism	map00230
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006164	biological_process	purine nucleotide biosynthetic process
GO:0004019	molecular_function	adenylosuccinate synthase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.159
	SRR3591706	second leaf	38.410
	SRR3591707	mature leaf	22.742
	SRR3591708	Shoot apex	55.751
	SRR3591709	Stem	26.270
	SRR3591710	White floral bud	41.069
	SRR3591711	White flower	71.153
	SRR3591712	Green floral bud	60.843
	SRR3591713	Yellow flower	75.617
SRP173429	SRR8316895	Juvenile bud stage	37.962
	SRR8316896	Juvenile bud stage	49.978
	SRR8316897	Juvenile bud stage	23.416
	SRR8316894	Third green stage	19.613
	SRR8316900	Third green stage	79.832
	SRR8316901	Third green stage	74.999
	SRR8316898	Complete white stage	30.850
	SRR8316899	Complete white stage	107.167
	SRR8316903	Complete white stage	34.699
	SRR8316902	Silver flowering stage	21.924
	SRR8316904	Silver flowering stage	27.293
	SRR8316905	Silver flowering stage	13.587
	SRR8316906	Gold flowering stage	64.776
	SRR8316907	Gold flowering stage	60.385
	SRR8316908	Gold flowering stage	71.502
SRP132670	SRR6706286	Control	64.214
	SRR6706287	Light intensity 50%	66.164
	SRR6706288	Light intensity 20%	78.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.800
	CNS0095593	Slightly white alabastrum(diploid) 2	42.506
	CNS0095594	Slightly white alabastrum(diploid) 3	31.588
	CNS0095595	Whole white alabastrum(diploid) 2	33.279
	CNS0095596	Whole white alabastrum(diploid) 3	29.882
	CNS0095597	Whole white alabastrum(diploid) 4	32.307
	CNS0095598	Silvery flower (diploied) 1	31.366
	CNS0095599	Silvery flower (diploied) 2	34.132
	CNS0095600	Silvery flower (diploied) 3	67.844
	CNS0095601	Golden flower (diploid) 1	31.373
	CNS0095602	Golden flower (diploid) 2	61.075
	CNS0095603	Golden flower (diploid) 3	55.942
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.281
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.551
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.097
	CNS0095610	Silvery flower (tetraploid) 1	44.513
	CNS0095611	Silvery flower (tetraploid) 2	53.015
	CNS0095612	Silvery flower (tetraploid) 3	46.567
	CNS0095613	Golden flower (tetraploid) 1	24.137
	CNS0095614	Golden flower (tetraploid) 2	38.750
	CNS0095615	Golden flower (tetraploid) 3	27.855
CRA001975	CRR073297	Stem 1	56.794
	CRR073298	Stem 2	56.336
	CRR073299	Stem 3	58.110
	CRR073300	Leaf 1	78.450
	CRR073301	Leaf 2	73.202
	CRR073302	Leaf 3	79.591
	CRR073303	Juvenile bud 1	94.764
	CRR073304	Juvenile bud 2	90.194
	CRR073305	Juvenile bud 3	102.440
	CRR073306	Third green 1	30.215
	CRR073307	Third green 2	19.773
	CRR073308	Third green 3	22.634
	CRR073309	Second white 1	67.456
	CRR073310	Second white 2	58.623
	CRR073311	Second white 3	53.589
	CRR073312	Silver flowering 1	65.974
	CRR073313	Silver flowering 2	73.249
	CRR073314	Silver flowering 3	57.331
	CRR073315	Gold flowering 1	51.885
	CRR073316	Gold flowering 2	63.885
	CRR073317	Gold flowering 3	53.931
	CRR073318	Tawny withering 1	49.700
	CRR073319	Tawny withering 2	64.786
	CRR073320	Tawny withering 3	60.944