Gene detail

Detail information of GWHGAAZE032511

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAJ53259.1	0	JMS10C05.2 [Jatropha curcas]
COG	YP_004464004.1	3E-67	raffinose synthase
Swissprot	tr\|Q94A08\|RFS2_ARATH	0	Probable galactinol--sucrose galactosyltransferase 2
trEMBL	tr\|E6NUE9\|E6NUE9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26039.1}
TAIR10	AT3G57520.1	0	seed imbibition 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3753174	3758551	+
GWHAAZE00000021	mRNA	3753174	3758551	+
GWHAAZE00000021	exon	3753174	3753364	+
GWHAAZE00000021	exon	3753521	3753762	+
GWHAAZE00000021	exon	3753930	3754020	+
GWHAAZE00000021	exon	3754188	3754236	+
GWHAAZE00000021	exon	3754327	3754418	+
GWHAAZE00000021	exon	3754528	3754638	+
GWHAAZE00000021	exon	3754770	3754892	+
GWHAAZE00000021	exon	3755796	3756348	+
GWHAAZE00000021	exon	3756451	3756518	+
GWHAAZE00000021	exon	3757094	3757228	+
GWHAAZE00000021	exon	3757329	3757546	+
GWHAAZE00000021	exon	3757668	3757756	+
GWHAAZE00000021	exon	3757921	3758551	+
GWHAAZE00000021	CDS	3753174	3753364	+
GWHAAZE00000021	CDS	3753521	3753762	+
GWHAAZE00000021	CDS	3753930	3754020	+
GWHAAZE00000021	CDS	3754188	3754236	+
GWHAAZE00000021	CDS	3754327	3754418	+
GWHAAZE00000021	CDS	3754528	3754638	+
GWHAAZE00000021	CDS	3754770	3754892	+
GWHAAZE00000021	CDS	3755796	3756348	+
GWHAAZE00000021	CDS	3756451	3756518	+
GWHAAZE00000021	CDS	3757094	3757228	+
GWHAAZE00000021	CDS	3757329	3757546	+
GWHAAZE00000021	CDS	3757668	3757756	+
GWHAAZE00000021	CDS	3757921	3758283	+
GWHAAZE00000021	three_prime_UTR	3758284	3758551	+

Transcript Sequence
>GWHTAAZE032549 ATGACTGTTACCCCAAAGATCTCCATCAACGATGGAAATCTCGTGGTTCATGGAAAGACTATATTGACAGGAGTGCCTGATAACATTGTGCTAACCCCAGGGTCTGGTGTTGGGCTAGTTACTGGGGCATTTATTGGTGCCACTGCTTCAGATAGCAAAAGCCTCCATGTCTTCCCTGTTGGCACCTTAGAGGGTCTTCGATTCATGTGTTGTTTCCGTTTTAAGTTATGGTGGATGACTCAGAGAATGGGCATGTATGGGAAGGATGTTCCTTTGGAGACCCAATTCATGCTTGTGGAGAGCAAAGACAACTCTGATGGTGAAACTGATGCCCCGACCATATATACCGTTTTCCTCCCTCTCCTTGAAGGACAATTCCGGGCTGTTCTCCAGGGCAATGATAATAATGAACTAGAGATTTGTCTCGAGAGTGGAGATGATGCTGTTGAAACCAATCAAGGGCTATGCCTTCTCTACATGCATGCTGGGACCAATCCATTTGAAGTCATTAACCAGTCTATAAAAGCTGTCGAAAAGCATATGCAAACATTTCATCACCGAGAGAAGAAAAAGTTGCCATCTTTCCTTGACTGGTTCGGCTGGTGCACGTGGGATGCTTTCTACACTGATGTTACAGCAGAGGGTGTTCATGAAGGCCTTAAAAGCTTGTCACAAGGTGGAACTCCTCCACGGTTTCTAATCATAGACGATGGTTGGCAACAGATTGGTGGTCTGGATTCCAAGGACAACAACTGCGTTGTGCAAGAAGGAGCACAGTTTGCAAATCGATTGACAGGACTAAAAGAGAATGCTAAGTTCCAAAAGAATGGAAAGAATGATGACCATGTTCCAGGGCTGAAGCTCGTTGTGGATGAAGCCAAGAAACATCACAATGTCAAGAACGTATACGTATGGCATGCCTTAGCCGGTTACTGGGGAGGAGTACAACCAACTGGTACTGGCATGGAACCCTACGACCCTAAACTGGCATACCCAGTTCAGTCTCCAGGTGTAACTGGCAACCAACCCGACGTAGTCATGGACAGCCTAGCCGTCCATGGCCTGGGTCTGGTCCACCCGAAAAAGGTCTTTGATTTCTACAACGAGCTCCACGCTTACTTAGCTTCATGCGGAGTAGATGGAGTCAAAGTTGATGTGCAAAACATTATTGAGACCCTTGGTGCTGGCCATGGGGGCAGAGTCTCTCTAACACGGAGCTATGTACAGGCCCTCGAAGCCTCCATTGCACGGAACTTTCCGGAGAACAGTTGCATTGCTTGTATGTGTCACAATACTGATGGGTTGTATAGTGCTAAGCAGACTGCAGTGGTTCGAGCTTCCGATGATTTTTACCCACGGGACCCTGCTTCACACACCATTCATATTTCGTCTGTGGCTTATAATACGCTGTTTCTTGGTGAATTCATGCAGCCGGATTGGGACATGTTCCATAGCTTACATCCAGCTGCTGATTATCATGCTGCAGCTCGGGCTGTTGGAGGATGTCCAATTTATGTTAGTGACAAACCTGGAAACCATAACTTCGAGCTTTTGAAGAAATTGGTACTCCCTGATGGATCAGTGCTCCGTGCCAAATTGCCTGGCAGGCCTACACGTGACTGCCTCTTTGTCGATCCAGCTAGAGACGGTATCAGCTTGCTTAAAGTTTGGAATGTGAACAAATGTGCTGGTATGGTTGGCGTCTTCAACTGCCAGGGTGCCGGTTGGTGCAAGGTTGCAAAGAAGACCCGCATCCATGATTCATCTCCTGGCACCCTCAGTGGTTCGATTCAAGCCACTGATGTCGACTCCATTGCTCAACTTGCTGGTCCAGATTGGAATGGGGAAACAATAGTCTATGCATATAGATCAGGGGAGCTAATTCGGTTACCAAAAGGTGCTTCCCTGCCCGTGACACTCAAAGTTCTTGAATACGAACTTTTCCATATTTTCCCTCTCAAGGAAGTTGCTGCGAATATTTCTTTTGCACCCATAGGTCTGCTTAGCATGTTCAATACTGGTGGTGCAGTGGAGGAGTTCGAAGTTCGGCTCTCTTCTGATAAGAAACCGGAGCTCTTCGATGGCGAGGTTTCATCTAATCTCTCAACTCCTCCAAGCGAAAACCGATCTTCTGTTGCGACGATTGCACTCAAAGTGAGGGGATGTGGTTGCTTTGGTGCTTACTCTTCACAGCGCCCACTAAAATGCACTGTGGAGAACGTTGAGACCGATTTCGACTATGACGACAATACTGGATTACTTACCCTGTCCATCCCTGTCCCAGAACAGGAGATGTACAGATGGCCAATTGAAATTCAAGTTTGAGTAGTTTTAGTTTAAGTAGCTTCTCAAGAATTATAGTAGAGGGTAATTGGAAAATTCGGCCATTGATTGGGTGGGGCGGGGTGTTCATGTATGAGGTGAGGGTGATGGCTTAGTATTATTTTGAGTTATGCTTTGTATGTTAAAGAGGGAACTAATGAGTGAGGTTTGTATTGTTGCTAATCAGATTCCCTTTAATAAAGGTTCCTTGTAGAACTTGTTCAAATCTAACCATGTTGTTGGTATATATATTCACCTAAGTTTTTACATA

Network for GWHGAAZE032511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	7	757	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.338
	SRR3591706	second leaf	35.834
	SRR3591707	mature leaf	26.437
	SRR3591708	Shoot apex	139.762
	SRR3591709	Stem	44.369
	SRR3591710	White floral bud	242.524
	SRR3591711	White flower	150.338
	SRR3591712	Green floral bud	51.216
	SRR3591713	Yellow flower	94.674
SRP173429	SRR8316895	Juvenile bud stage	48.865
	SRR8316896	Juvenile bud stage	51.655
	SRR8316897	Juvenile bud stage	23.661
	SRR8316894	Third green stage	26.734
	SRR8316900	Third green stage	178.877
	SRR8316901	Third green stage	195.662
	SRR8316898	Complete white stage	258.762
	SRR8316899	Complete white stage	202.731
	SRR8316903	Complete white stage	420.070
	SRR8316902	Silver flowering stage	95.864
	SRR8316904	Silver flowering stage	127.396
	SRR8316905	Silver flowering stage	56.397
	SRR8316906	Gold flowering stage	122.039
	SRR8316907	Gold flowering stage	78.771
	SRR8316908	Gold flowering stage	92.783
SRP132670	SRR6706286	Control	182.398
	SRR6706287	Light intensity 50%	188.392
	SRR6706288	Light intensity 20%	164.824
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	92.684
	CNS0095593	Slightly white alabastrum(diploid) 2	67.259
	CNS0095594	Slightly white alabastrum(diploid) 3	52.061
	CNS0095595	Whole white alabastrum(diploid) 2	69.942
	CNS0095596	Whole white alabastrum(diploid) 3	86.294
	CNS0095597	Whole white alabastrum(diploid) 4	77.623
	CNS0095598	Silvery flower (diploied) 1	82.117
	CNS0095599	Silvery flower (diploied) 2	137.069
	CNS0095600	Silvery flower (diploied) 3	261.345
	CNS0095601	Golden flower (diploid) 1	156.154
	CNS0095602	Golden flower (diploid) 2	213.715
	CNS0095603	Golden flower (diploid) 3	204.573
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.543
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	123.574
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.416
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	103.256
	CNS0095610	Silvery flower (tetraploid) 1	128.884
	CNS0095611	Silvery flower (tetraploid) 2	118.887
	CNS0095612	Silvery flower (tetraploid) 3	68.009
	CNS0095613	Golden flower (tetraploid) 1	93.842
	CNS0095614	Golden flower (tetraploid) 2	177.048
	CNS0095615	Golden flower (tetraploid) 3	238.303
CRA001975	CRR073297	Stem 1	67.337
	CRR073298	Stem 2	57.002
	CRR073299	Stem 3	72.928
	CRR073300	Leaf 1	113.509
	CRR073301	Leaf 2	92.514
	CRR073302	Leaf 3	80.613
	CRR073303	Juvenile bud 1	100.571
	CRR073304	Juvenile bud 2	130.537
	CRR073305	Juvenile bud 3	131.209
	CRR073306	Third green 1	250.896
	CRR073307	Third green 2	179.546
	CRR073308	Third green 3	173.257
	CRR073309	Second white 1	44.848
	CRR073310	Second white 2	38.607
	CRR073311	Second white 3	21.486
	CRR073312	Silver flowering 1	25.376
	CRR073313	Silver flowering 2	33.822
	CRR073314	Silver flowering 3	23.385
	CRR073315	Gold flowering 1	7.089
	CRR073316	Gold flowering 2	9.803
	CRR073317	Gold flowering 3	7.843
	CRR073318	Tawny withering 1	33.266
	CRR073319	Tawny withering 2	27.957
	CRR073320	Tawny withering 3	22.177