Gene detail

Detail information of GWHGAAZE032512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008359554.1	6.2992E-112	PREDICTED: polygalacturonase-like isoform X1 [Malus domestica]
COG	YP_003539182.1	8E-22	endo-polygalacturonase
Swissprot	tr\|P35336\|PGLR_ACTDE	3E-114	Polygalacturonase (Precursor)
trEMBL	tr\|Q9M6S2\|Q9M6S2_ACTCH	6E-112	Polygalacturonase A {ECO:0000313\|EMBL:AAF71160.1}
TAIR10	AT2G41850.1	2E-63	polygalacturonase abscission zone A. thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3815875	3821259	+
GWHAAZE00000021	mRNA	3815875	3821259	+
GWHAAZE00000021	exon	3815875	3816106	+
GWHAAZE00000021	exon	3818831	3818912	+
GWHAAZE00000021	exon	3819029	3819137	+
GWHAAZE00000021	exon	3819716	3819832	+
GWHAAZE00000021	exon	3821011	3821259	+
GWHAAZE00000021	CDS	3815875	3816106	+
GWHAAZE00000021	CDS	3818831	3818912	+
GWHAAZE00000021	CDS	3819029	3819137	+
GWHAAZE00000021	CDS	3819716	3819832	+
GWHAAZE00000021	CDS	3821011	3821259	+

Transcript Sequence
>GWHTAAZE032550 ATGACTCAAGTTTTTTTTTGGCAGGCTTTACACTTCTACAAGAACAAGAAATTGAGTGTAAAGAACCTGAAGATTGAAGATGCACCACAAATACAAGTTTCTTTTCAGAGTAGTGAGAATGTTATAGCTTCCAATCTAAAGGTAACTGCACCAGAGAGTAGCCCCAACACAGATGGAATTCACGTTACCCGCACCAAAGACATCAATCTCTCTAATATTGATATTGGAACAGGTGATGATTGTATTTCAATAGTAAGTGGGTCCCAGAAGGTGCGGGCCACGAATATAACATGTGGACCAGGACATGGAATCAGCATCGGAAGCCTGGGTTCTGGAAAATCAACGGCTAATGTTTCAGATGTAACAGTGAATGGAGCTAAATTTTCTGGAACATCTAACGGCGTTAGGATAAAAACGTATCAGGGTGGACGTGGGAGTGCAAGCAACATCAAATTCCAGAATGTTGAAATGCATAACGTGAAAAACCCTATAATCATAGACCAACACTATTGTGACCTACCTACACCATGCAAAGAACAGAGTTCAGCTGTGCATATTGAAAATGTGAAGTACCAAAGCATTAGTGGAACAAGTGCTTCTGAAAAGGCTTTACTCTTTGATTGCAGTAAGAGCGTTCCGTGCCAAGGGATTGTGGTACAAGACATCAACTTAGTGCGCGAAAATGGTGAAGATGCAAAAGCTGTATGCAACAATGTCATTTATAAGGAAGTTGGAGTTGTTAGGCCTCATTGCCCTAGAGATGAAGGAATATTGCATGATGAATTATAA

Network for GWHGAAZE032512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	9	240	1.60E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.470
	SRR3591706	second leaf	0.163
	SRR3591707	mature leaf	1.259
	SRR3591708	Shoot apex	0.144
	SRR3591709	Stem	29.644
	SRR3591710	White floral bud	83.511
	SRR3591711	White flower	0.586
	SRR3591712	Green floral bud	98.853
	SRR3591713	Yellow flower	0.304
SRP173429	SRR8316895	Juvenile bud stage	0.774
	SRR8316896	Juvenile bud stage	2.110
	SRR8316897	Juvenile bud stage	0.706
	SRR8316894	Third green stage	3.393
	SRR8316900	Third green stage	48.655
	SRR8316901	Third green stage	27.385
	SRR8316898	Complete white stage	0.287
	SRR8316899	Complete white stage	0.269
	SRR8316903	Complete white stage	0.456
	SRR8316902	Silver flowering stage	0.165
	SRR8316904	Silver flowering stage	0.610
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.349
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	86.544
	SRR6706287	Light intensity 50%	101.432
	SRR6706288	Light intensity 20%	116.668
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.632
	CNS0095595	Whole white alabastrum(diploid) 2	0.623
	CNS0095596	Whole white alabastrum(diploid) 3	2.445
	CNS0095597	Whole white alabastrum(diploid) 4	2.530
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.496
	CNS0095600	Silvery flower (diploied) 3	0.940
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.251
	CNS0095603	Golden flower (diploid) 3	0.629
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.926
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.413
	CNS0095609	Whole white alabastrum(tetraploid) 3	151.553
	CNS0095610	Silvery flower (tetraploid) 1	2.575
	CNS0095611	Silvery flower (tetraploid) 2	0.804
	CNS0095612	Silvery flower (tetraploid) 3	0.785
	CNS0095613	Golden flower (tetraploid) 1	0.309
	CNS0095614	Golden flower (tetraploid) 2	2.412
	CNS0095615	Golden flower (tetraploid) 3	4.491
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.329
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	4.211
	CRR073301	Leaf 2	2.428
	CRR073302	Leaf 3	4.588
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	6.094
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	2.783
	CRR073308	Third green 3	0.955
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.066
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.028
	CRR073320	Tawny withering 3	0.000