Gene detail

Detail information of GWHGAAZE032514

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010102532.1	9.7227E-130	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Morus notabilis]
Swissprot	tr\|Q0D5B9\|SAP16_ORYSJ	3E-99	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
trEMBL	tr\|W9RRL3\|W9RRL3_9ROSA	4E-130	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 {ECO:0000313\|EMBL:EXB93618.1}
TAIR10	AT2G41835.1	5E-78	zinc finger (C2H2 type, AN1-like) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3884576	3888354	+
GWHAAZE00000021	mRNA	3884576	3888354	+
GWHAAZE00000021	exon	3884576	3884674	+
GWHAAZE00000021	exon	3886879	3886949	+
GWHAAZE00000021	exon	3887069	3887115	+
GWHAAZE00000021	exon	3887388	3887467	+
GWHAAZE00000021	exon	3887569	3888354	+
GWHAAZE00000021	CDS	3884576	3884674	+
GWHAAZE00000021	CDS	3886879	3886949	+
GWHAAZE00000021	CDS	3887069	3887115	+
GWHAAZE00000021	CDS	3887388	3887467	+
GWHAAZE00000021	CDS	3887569	3888354	+

Transcript Sequence
>GWHTAAZE032552 ATGGGAACTCCGGCATTTCCAAATCTTGGAAAGCATTGCACCGTCGATGACTGCAAGAAGATCGATTTCCTCCCCTTCACCTGCGATTCTTGCCACCAGGGTGTTCTTCCAATTTATAAAGCTGCAATGGGTTTTATGGTGCCATGGGGATACAGGTGGTCGGTGGTGGGGGAAGTAGATAATGGTGGTGGGTGGCGGCAGGAGGTAGAGCGTGCTGCTTTCACTACTCCCATTTTTCACGATTTGTTTGTTCTTGGTGGTGTATCGTGGTGGATCCGGGCTTTAAATTTGAATAATGTATTCTGTCTAGAGCATCGGAGTTACATCAAACACCAATGCCCAAACGCCAACAAAAACGACGTTACTGTTGTCATCTGTCCGCTCTGCGCAAAAGGGGTCCACCTAATCCCCGATGAAGACCCGAACATCACCTGGGAATCCCACGTTAACACAGATTGTGACCCATCAAACTACGAAAAAGCCACCAAGAAGAAAAAATGCCCCGTCCAAGGCTGCAGAGAGACCCTCACATTCTCAAACACAATTAAGTGCCGAGACTGCACCATAGACCACTGCTTAAAGCACCGGTTCGGACCAGACCACACCTGTCCTGGACCCAAAAAGCCTGACGCATTCCAGCTTATGGGATTCATGAACAGAAATAAGAAAGACCCGAAGCCAAACAAAGCTCCTGCTCCAGTCAGGTCTTCTCCCGGTTGGGCCTCGAGCTTTGCGAAGGCAGCTTCCTCAGTCCGAGCCACAGCCGAGGCCGGGATGGCTAAATTGAGCAGCGAGTTTAGCCAAGTGATGCAGACATCAAGGGACGGACCAAGCCAGAGCGGCGGCTCCAGCAGCAATGGTAGGGCTAGCAGCGGTCAAGTTGAGCGGTGCCCGCAGTGCGGTTTAAGGTTCTCTTCGGTTACGGATCTGGTGGATCATGTGGAGAAGGATCATGAAAGAGGTGGCACACGGACCAGTGTAATGAAGGTGACGGTCGATGTCTGCCCTAAGTGTAGTAGAGGGTTTCGGGATCCGGTGGCCCTTGTTCAGCATGTGGAGAGGGACCATGGTGGTGCTTCATAA

Network for GWHGAAZE032514

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01428.17	zf-AN1	167	207	2.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.651
	SRR3591706	second leaf	5.082
	SRR3591707	mature leaf	2.355
	SRR3591708	Shoot apex	9.531
	SRR3591709	Stem	13.999
	SRR3591710	White floral bud	6.917
	SRR3591711	White flower	7.224
	SRR3591712	Green floral bud	8.094
	SRR3591713	Yellow flower	6.258
SRP173429	SRR8316895	Juvenile bud stage	13.270
	SRR8316896	Juvenile bud stage	11.438
	SRR8316897	Juvenile bud stage	8.013
	SRR8316894	Third green stage	3.514
	SRR8316900	Third green stage	8.416
	SRR8316901	Third green stage	12.816
	SRR8316898	Complete white stage	3.711
	SRR8316899	Complete white stage	17.769
	SRR8316903	Complete white stage	4.116
	SRR8316902	Silver flowering stage	2.689
	SRR8316904	Silver flowering stage	3.382
	SRR8316905	Silver flowering stage	2.058
	SRR8316906	Gold flowering stage	7.051
	SRR8316907	Gold flowering stage	5.530
	SRR8316908	Gold flowering stage	7.564
SRP132670	SRR6706286	Control	11.009
	SRR6706287	Light intensity 50%	11.401
	SRR6706288	Light intensity 20%	10.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.808
	CNS0095593	Slightly white alabastrum(diploid) 2	11.640
	CNS0095594	Slightly white alabastrum(diploid) 3	9.863
	CNS0095595	Whole white alabastrum(diploid) 2	8.992
	CNS0095596	Whole white alabastrum(diploid) 3	2.384
	CNS0095597	Whole white alabastrum(diploid) 4	5.309
	CNS0095598	Silvery flower (diploied) 1	9.968
	CNS0095599	Silvery flower (diploied) 2	16.631
	CNS0095600	Silvery flower (diploied) 3	9.038
	CNS0095601	Golden flower (diploid) 1	13.097
	CNS0095602	Golden flower (diploid) 2	11.432
	CNS0095603	Golden flower (diploid) 3	13.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.196
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.652
	CNS0095610	Silvery flower (tetraploid) 1	5.495
	CNS0095611	Silvery flower (tetraploid) 2	4.781
	CNS0095612	Silvery flower (tetraploid) 3	3.079
	CNS0095613	Golden flower (tetraploid) 1	3.488
	CNS0095614	Golden flower (tetraploid) 2	3.703
	CNS0095615	Golden flower (tetraploid) 3	1.767
CRA001975	CRR073297	Stem 1	9.526
	CRR073298	Stem 2	7.745
	CRR073299	Stem 3	7.861
	CRR073300	Leaf 1	12.772
	CRR073301	Leaf 2	14.956
	CRR073302	Leaf 3	10.730
	CRR073303	Juvenile bud 1	14.242
	CRR073304	Juvenile bud 2	15.245
	CRR073305	Juvenile bud 3	19.389
	CRR073306	Third green 1	3.508
	CRR073307	Third green 2	3.411
	CRR073308	Third green 3	5.452
	CRR073309	Second white 1	4.708
	CRR073310	Second white 2	0.938
	CRR073311	Second white 3	3.413
	CRR073312	Silver flowering 1	4.614
	CRR073313	Silver flowering 2	6.171
	CRR073314	Silver flowering 3	4.405
	CRR073315	Gold flowering 1	7.355
	CRR073316	Gold flowering 2	11.796
	CRR073317	Gold flowering 3	10.046
	CRR073318	Tawny withering 1	14.331
	CRR073319	Tawny withering 2	22.431
	CRR073320	Tawny withering 3	13.178