Gene detail

Detail information of GWHGAAZE032521

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009355499.1	0	PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Pyrus x bretschneideri]
COG	YP_004775215.1	2E-57	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O22938\|Y2182_ARATH	0	Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 (Precursor)
trEMBL	tr\|A0A061F432\|A0A061F432_THECC	0	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY09274.1}
TAIR10	AT2G41820.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4003309	4006802	-
GWHAAZE00000021	mRNA	4003309	4006802	-
GWHAAZE00000021	exon	4003309	4003634	-
GWHAAZE00000021	exon	4004465	4006802	-
GWHAAZE00000021	CDS	4004465	4006802	-
GWHAAZE00000021	CDS	4003309	4003634	-

Transcript Sequence
>GWHTAAZE032559 ATGGCAATGTTGTTCTTGATTTTGGTAATTGGGTTACTATCAAGGTCTCAACAAGTGAATGGTGAGGTCCTTCATGATGAGGCCACATTGGTAGCCATTAGCAAAGAGCTTGGTCTACCTGGGTGGGGTCTCAACAACTCATATTACTGTTCTTGGCCAGGTATTGGATGTGGCTTAAACAATTCCACAGTTGAGAAGCTTGATCTTTCTCATAGAGCACTTCAAGGTAACGTCACTCTACTTTCTGATCTCAAATCATTGAGGTGGCTTGACCTTTCTTATAACTATTTCCATGGCTCAATTCCACCATCTTTTGGGAACCTCTTTGAGCTTGAGTTTCTTGATTTATCTTCAAACAAATTTGGAGGCTCAATTCCTTCAGAGTTGGGTAAGCTCAGAAACCTAAGATCATTGAACCTTTCTAATAACTTTCTCTCTGGGGCAATACCTGATGAGCTTGAGGGGTTAGTGAAGTTACATGACTTTCAAATATACACCAACTTTTTTAATGGCACTATCCCAAATTGGGTGGGCAATTTGACCAATCTTAGGGTGTTTACAGCCTATGAGAATCAATTTGGTGGTAAAATCCCTGATAATTTAGGCTTGGCTTCAGAGCTTCAATTGTTGAACCTTCACTCGAATCAGCTCGAAGGATCCATACCAGATAGCATTTTTTCTACGGGGAAGCTTAAATTTTTGGTTCTCACCCAAAACAATTTGACTGGCTATCTCCCTGAACTAGTGGGAAATTGCGAAGGACTTTCTAGTATTAGAATTGGGAACAATCGGCTTATAGGCAGCATTCCTAAGGCGATCGGGAACGTTAGCAGCCTCACGTACTTCGAAGCCGACAACAACAATCTCTCTGGTGAGATTGTCCCTGAGTTTTCTTTGTGTTCGAATCTCACTCTCTTGAATCTGGCCTCAAATGGCTTTAGTGGGACTATTCCTCAAGAGTTTGGTCAGCTTACTAATCTGCAAGAACTGATTGTTTCTGGTAATAGTCTCTTTGGAGAGATACCCACGTCAATTCTTCGGTCCAAGAATCTTAACAAGCTCGATTTGAGCAATAATAGATTCAACGGAACCATACCCGAGAACATATGCAACTCATCAAGATTGCAGTACTTGTTGCTGGGTCAAAATTCGATAAGAGGGGAGATACCTCATCAGATAGGGAACTGCATAAAGCTTCTTGAATTGGAAATGGGTAGTAATTATCTGACAGGCACTATCCCTCCTGAGATTGGTAGAATCAAGAACTTGCAGATAGCCCTAAACTTAAGCTTCAATCATCTCCATGGACAATTGCCCCCCGATTTAGGGAAACTCGACAAGCTAGTTTGTTTAGATGTTTCTAATAATCAACTCAATGGGTATATTCCTTCTGAATTTAAGGGCATGCTAAGCTTGATCGAGGTCAATTTCTCAAATAACCACTTCACTGGCCCAGTACCCACTTTTGTGCCGTTTCAAAAGAACCCAAAGTCGAGCTTTTGGGGGAATAAAGGGCTTTGCGGAGAGCCACTGAATTCTTTGTGTGCGAATTCGAACAGTTCTGACCGACAAAGTTACCATCACAAGGTTTCTTACAGGATTGTATTAGCGGTTATTGGTTCCGGTTTAACGGTATTCGTGTCTGTAACGGTTGTTGTTCTTCTTTTCATGATGAGAGAGAAGCAAGAAAAAGAGGCCAAAGCTGCTGGAATTGATGAAGACGGTCCGAATAACAAACCCCTTATAATAGCTGGAAATGTGTTTGTTGAAAATCTAAGACAAGCTATAGATTTTGATGCTGCTATAAAAGCAACCCTTAAAGATTCGAATAAGCTCAGCGTTGGTACTTTCAGCACGGTTTACAAGGCAGAAATGCCCTCCGGGATGATTTTATCGGTGAAGAGGCTCAAGTCTGTGGACCGGACGATAATCCATTACCAAAATAAGATGGTTAGAGAGCTTGAAAGGCTGAGTAAACTTTGCCATGATAATATTGTGAGACCCATTGGGTTTGTAATCTATGAAGACGTTGCTCTTTTGTTGCACCAGTATTTACCTAATGGAACACTGGCTCAGTTTCTTCATGAATTGGCTAAGCAACCCGAGTACAAGCCCGATTGGCCGAGGAGACTCTCCATCGCTGTTGGAGTGGCAGAAGGGTTGGCGTTCCTTCATCATGTGGCTATCATTCACCTTGATATCTCTTCTGGTAATGTACTTCTCGATTCCAATTTCAAGCCTTTGGTTGGTGAAGTTGAAATATCAAAGCTCTTGGATCCCTCGAGAGGCACAGCAAGCATCAGTGCAGTTGCAGGCTCATTTGGGTACATTCCACCAGAATATGCATACACAATGCAAGTTACAGCCCCTGGAAATGTGTATAGCTATGGGGTTGTTTTGCTTGAGATCTTGACGACCCGATTACCAGTCGATGAAGATTTTGGTGAAGGGATAGATTTGGTGAAGTGGGTTCAAAGCGCACCGACAAGAGGAGAAACCCCAGAACAGATTCTTGATGCTAAGCTTAGCACTGTTTCCTTTGCTTGGAGAAAAGAAATGCTGGCGGCTCTAAAGGTGGCACTACTCTGTACCGATAGCACACCGGCTAAGCGACCGAAAATGAAAAAAGTTGTGGAAATGCTTCAAGAAATCACAGAAAGCTAA

Network for GWHGAAZE032521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	86	108	0.34
PF00560.34	LRR_1	134	156	0.027
PF07714.18	PK_Tyr_Ser-Thr	609	881	2.70E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.072
	SRR3591706	second leaf	8.887
	SRR3591707	mature leaf	8.520
	SRR3591708	Shoot apex	17.167
	SRR3591709	Stem	17.725
	SRR3591710	White floral bud	9.364
	SRR3591711	White flower	4.268
	SRR3591712	Green floral bud	19.756
	SRR3591713	Yellow flower	1.694
SRP173429	SRR8316895	Juvenile bud stage	6.614
	SRR8316896	Juvenile bud stage	7.762
	SRR8316897	Juvenile bud stage	2.050
	SRR8316894	Third green stage	6.354
	SRR8316900	Third green stage	12.838
	SRR8316901	Third green stage	13.342
	SRR8316898	Complete white stage	2.944
	SRR8316899	Complete white stage	15.234
	SRR8316903	Complete white stage	4.512
	SRR8316902	Silver flowering stage	0.939
	SRR8316904	Silver flowering stage	2.657
	SRR8316905	Silver flowering stage	0.584
	SRR8316906	Gold flowering stage	1.860
	SRR8316907	Gold flowering stage	1.178
	SRR8316908	Gold flowering stage	2.354
SRP132670	SRR6706286	Control	8.224
	SRR6706287	Light intensity 50%	8.323
	SRR6706288	Light intensity 20%	9.091
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.395
	CNS0095593	Slightly white alabastrum(diploid) 2	9.701
	CNS0095594	Slightly white alabastrum(diploid) 3	5.594
	CNS0095595	Whole white alabastrum(diploid) 2	6.093
	CNS0095596	Whole white alabastrum(diploid) 3	6.367
	CNS0095597	Whole white alabastrum(diploid) 4	5.218
	CNS0095598	Silvery flower (diploied) 1	10.263
	CNS0095599	Silvery flower (diploied) 2	8.566
	CNS0095600	Silvery flower (diploied) 3	5.330
	CNS0095601	Golden flower (diploid) 1	7.452
	CNS0095602	Golden flower (diploid) 2	7.140
	CNS0095603	Golden flower (diploid) 3	6.553
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.356
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.543
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.177
	CNS0095610	Silvery flower (tetraploid) 1	4.188
	CNS0095611	Silvery flower (tetraploid) 2	6.857
	CNS0095612	Silvery flower (tetraploid) 3	4.374
	CNS0095613	Golden flower (tetraploid) 1	0.528
	CNS0095614	Golden flower (tetraploid) 2	3.303
	CNS0095615	Golden flower (tetraploid) 3	2.351
CRA001975	CRR073297	Stem 1	20.801
	CRR073298	Stem 2	25.813
	CRR073299	Stem 3	25.823
	CRR073300	Leaf 1	34.735
	CRR073301	Leaf 2	27.304
	CRR073302	Leaf 3	27.228
	CRR073303	Juvenile bud 1	25.883
	CRR073304	Juvenile bud 2	18.764
	CRR073305	Juvenile bud 3	34.843
	CRR073306	Third green 1	2.422
	CRR073307	Third green 2	3.616
	CRR073308	Third green 3	4.017
	CRR073309	Second white 1	1.295
	CRR073310	Second white 2	1.356
	CRR073311	Second white 3	0.798
	CRR073312	Silver flowering 1	0.293
	CRR073313	Silver flowering 2	0.456
	CRR073314	Silver flowering 3	0.406
	CRR073315	Gold flowering 1	5.279
	CRR073316	Gold flowering 2	7.220
	CRR073317	Gold flowering 3	6.821
	CRR073318	Tawny withering 1	17.989
	CRR073319	Tawny withering 2	7.572
	CRR073320	Tawny withering 3	20.970