Detail information of GWHGAAZE032527


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011075248.10PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Sesamum indicum]
COGYP_007082183.10magnesium chelatase subunit H
Swissprottr|Q9FNB0|CHLH_ARATH0Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBLtr|V4SCG9|V4SCG9_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR34631.1}
TAIR10AT5G13630.10magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene41116604115736-
GWHAAZE00000021mRNA41116604115736-
GWHAAZE00000021exon41116604112037-
GWHAAZE00000021exon41124644112967-
GWHAAZE00000021exon41134444115246-
GWHAAZE00000021exon41157224115736-
GWHAAZE00000021CDS41157224115736-
GWHAAZE00000021CDS41134444115246-
GWHAAZE00000021CDS41124644112967-
GWHAAZE00000021CDS41116604112037-
Transcript Sequence

Network for GWHGAAZE032527

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02514.17CobN-Mg_chel48792.50E-279
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03403chlH, bchH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015995biological_processchlorophyll biosynthetic process
GO:0009058biological_processbiosynthetic process
GO:0016851molecular_functionmagnesium chelatase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf276.213
SRR3591706second leaf1087.991
SRR3591707mature leaf991.568
SRR3591708Shoot apex450.571
SRR3591709Stem187.993
SRR3591710White floral bud27.096
SRR3591711White flower45.402
SRR3591712Green floral bud25.380
SRR3591713Yellow flower5.719
SRP173429 SRR8316895Juvenile bud stage 76.070
SRR8316896Juvenile bud stage 74.307
SRR8316897Juvenile bud stage 48.362
SRR8316894Third green stage 32.263
SRR8316900Third green stage 52.082
SRR8316901Third green stage 57.012
SRR8316898Complete white stage 10.606
SRR8316899Complete white stage 41.551
SRR8316903Complete white stage 24.059
SRR8316902Silver flowering stage7.146
SRR8316904Silver flowering stage11.454
SRR8316905Silver flowering stage3.628
SRR8316906Gold flowering stage 7.182
SRR8316907Gold flowering stage 7.656
SRR8316908Gold flowering stage 12.920
SRP132670SRR6706286Control91.870
SRR6706287Light intensity 50%70.765
SRR6706288Light intensity 20%66.591
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.015
CNS0095593Slightly white alabastrum(diploid) 231.793
CNS0095594Slightly white alabastrum(diploid) 335.408
CNS0095595Whole white alabastrum(diploid) 231.184
CNS0095596Whole white alabastrum(diploid) 317.984
CNS0095597Whole white alabastrum(diploid) 422.607
CNS0095598Silvery flower (diploied) 1172.049
CNS0095599Silvery flower (diploied) 2170.626
CNS0095600Silvery flower (diploied) 361.658
CNS0095601Golden flower (diploid) 1160.094
CNS0095602Golden flower (diploid) 2110.542
CNS0095603Golden flower (diploid) 3104.226
CNS0095604Slightly white alabastrum(tetraploid) 143.028
CNS0095605Slightly white alabastrum(tetraploid) 230.671
CNS0095606Slightly white alabastrum(tetraploid) 3110.835
CNS0095607Whole white alabastrum(tetraploid) 128.078
CNS0095608Whole white alabastrum(tetraploid) 210.833
CNS0095609Whole white alabastrum(tetraploid) 341.507
CNS0095610Silvery flower (tetraploid) 166.146
CNS0095611Silvery flower (tetraploid) 274.274
CNS0095612Silvery flower (tetraploid) 39.253
CNS0095613Golden flower (tetraploid) 111.406
CNS0095614Golden flower (tetraploid) 247.458
CNS0095615Golden flower (tetraploid) 39.438
CRA001975CRR073297Stem 152.570
CRR073298Stem 241.131
CRR073299Stem 360.605
CRR073300Leaf 123.991
CRR073301Leaf 229.627
CRR073302Leaf 319.201
CRR073303Juvenile bud 127.075
CRR073304Juvenile bud 212.452
CRR073305Juvenile bud 337.684
CRR073306Third green 13.645
CRR073307Third green 22.545
CRR073308Third green 35.750
CRR073309Second white 14.325
CRR073310Second white 23.409
CRR073311Second white 32.308
CRR073312Silver flowering 11.011
CRR073313Silver flowering 22.117
CRR073314Silver flowering 31.558
CRR073315Gold flowering 1205.142
CRR073316Gold flowering 2220.467
CRR073317Gold flowering 3193.330
CRR073318Tawny withering 167.297
CRR073319Tawny withering 232.632
CRR073320Tawny withering 349.489