Gene detail

Detail information of GWHGAAZE032528

Functional Annotation

Database	Orthologs	Annotation
Nr	KHN13947.1	Magnesium-chelatase subunit H [Glycine soja]
COG	NP_488405.1	magnesium chelatase subunit H
Swissprot	tr\|Q9FNB0\|CHLH_ARATH	Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBL	tr\|F6HKY8\|F6HKY8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55126.1}
TAIR10	AT5G13630.1	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4116399	4117814	-
GWHAAZE00000021	mRNA	4116399	4117814	-
GWHAAZE00000021	exon	4116399	4117814	-
GWHAAZE00000021	CDS	4116399	4117814	-

Transcript Sequence
>GWHTAAZE032566 ATGGCTTCTTTAGTTTCTTCCCCATTCACCTTACCCACCACAAAAGTAGACAATCTCTCCTCAATTTCCCAAAAACACTACTTTCTTCACTCATTTCTCCCCAAAAAGGCCAATCAAAACAGCCCAAAATCACAATTGAGAGTGAAATGTGCCGCAATTGGCAATGGGCTGTTCACACAAACAACACAAGAGGTTCGTCGAATCGTACCCGAGAATCTTAATGGCCTTCCCACTGTTAAAATTGTATATGTAGTCTTAGAAGCCCAATACCAATCCTCACTCTCCGAGGCAATTAGAACCCTCAACAGCACTAGCAAAGTTGCTTCTTTTGAAGTTGTGGGTTACTTGGTTGAAGAGCTTAGAGACAAGAATGCTTATGAATCTTTCTGCAAGGACCTTGAAGATGCCAATATCTTCATTGGGTCTTTGATCTTTGTTGAGGAGCTTGCTTTGAAAGTGAAGGCAGCAGTGGAGAAAGAGAGGGACAGGCTTGATGCAGTCCTAGTGTTCCCTTCAATGCCTGAGGTAATGAGGCTCAACAAATTGGGGTCTTTTAGCATGTCCCAATTGGGTCAATCAAAGAGCCCCTTTTTTCAGCTCTTCAAGAGGAAGAAACCATCCTCTGCCGGTTTCGCCGATAGTATGTTGAAGCTTGTGAGGACTTTGCCTAAGGTGTTGAAGTACTTGCCAAGTGATAAGGCTCAAGATGCTAGGCTTTATATACTTAGTTTGCAGTTTTGGCTTGGTGGGTCACCAGATAATCTTGTTAACTTTGTGAAAATGATATCCGGGTCATATATTCCGGCTTTGAAGGGCACGAAAATGGAGTATTCAGACCCGGTTTTGTTCTTGGATACTGGAATTTGGCACCCTTTGGCCCCACAGATGTATGATGATGTGAAGGAGTATCTGAATTGGTATGAGACTAGAAGGGATACCAATGAGCAGCTCAAGAACCCAGATGCACCAGTGGTTGGGCTAATTCTGCAGAGGAGTCACATTGTTACTGGTGATGAGAGTCACTATGTGGCTGTGATCATGGAGTTGGAAGCAAGAGGGGCTAAAGTGATTCCAATTTTTGCTGGCGGGCTTGATTTTTCGGGGCCGGTTGAGAGGTACTTGGTTGATCCGATAACCAAGAAGCCGTTTGTGAACTCGGTCGTGTCATTGACAGGGTTTGCTCTTGTTGGAGGGCCAGCTAGGCAGAACCATCCGAGGGCTATAGAGGCATTGATGAAGCTCAATGTGCCTTATATTGTTGCTTTGCCCCTTGTGTTCCAAACAACAGAGGAGTGGCTCAACAGCACTTTGGGTCTTCACCCAATTCAAGTGGCTTTGCAGGTTGCTCTTCCAGAGCTGGATGGTGGAATGGAGCCCATCGTTTTCTCTGGCCGGGACCCGAGAACAGGCAAGTGA

Network for GWHGAAZE032528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11965.9	DUF3479	80	241	1.30E-48
PF02514.17	CobN-Mg_chel	245	466	2.60E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03403	chlH, bchH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016851	molecular_function	magnesium chelatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	213.085
	SRR3591706	second leaf	711.553
	SRR3591707	mature leaf	596.262
	SRR3591708	Shoot apex	210.216
	SRR3591709	Stem	97.501
	SRR3591710	White floral bud	18.973
	SRR3591711	White flower	28.765
	SRR3591712	Green floral bud	11.570
	SRR3591713	Yellow flower	2.690
SRP173429	SRR8316895	Juvenile bud stage	37.691
	SRR8316896	Juvenile bud stage	30.944
	SRR8316897	Juvenile bud stage	23.783
	SRR8316894	Third green stage	18.616
	SRR8316900	Third green stage	25.418
	SRR8316901	Third green stage	26.067
	SRR8316898	Complete white stage	6.049
	SRR8316899	Complete white stage	21.910
	SRR8316903	Complete white stage	15.868
	SRR8316902	Silver flowering stage	3.890
	SRR8316904	Silver flowering stage	8.445
	SRR8316905	Silver flowering stage	2.719
	SRR8316906	Gold flowering stage	4.765
	SRR8316907	Gold flowering stage	3.463
	SRR8316908	Gold flowering stage	6.228
SRP132670	SRR6706286	Control	55.399
	SRR6706287	Light intensity 50%	49.947
	SRR6706288	Light intensity 20%	47.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.363
	CNS0095593	Slightly white alabastrum(diploid) 2	6.193
	CNS0095594	Slightly white alabastrum(diploid) 3	8.031
	CNS0095595	Whole white alabastrum(diploid) 2	9.606
	CNS0095596	Whole white alabastrum(diploid) 3	2.495
	CNS0095597	Whole white alabastrum(diploid) 4	6.566
	CNS0095598	Silvery flower (diploied) 1	82.964
	CNS0095599	Silvery flower (diploied) 2	76.693
	CNS0095600	Silvery flower (diploied) 3	42.605
	CNS0095601	Golden flower (diploid) 1	61.520
	CNS0095602	Golden flower (diploid) 2	74.796
	CNS0095603	Golden flower (diploid) 3	72.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.524
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.807
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.792
	CNS0095610	Silvery flower (tetraploid) 1	43.132
	CNS0095611	Silvery flower (tetraploid) 2	52.599
	CNS0095612	Silvery flower (tetraploid) 3	5.254
	CNS0095613	Golden flower (tetraploid) 1	3.507
	CNS0095614	Golden flower (tetraploid) 2	22.928
	CNS0095615	Golden flower (tetraploid) 3	6.120
CRA001975	CRR073297	Stem 1	20.118
	CRR073298	Stem 2	15.520
	CRR073299	Stem 3	19.486
	CRR073300	Leaf 1	7.657
	CRR073301	Leaf 2	8.638
	CRR073302	Leaf 3	7.022
	CRR073303	Juvenile bud 1	6.463
	CRR073304	Juvenile bud 2	3.773
	CRR073305	Juvenile bud 3	12.059
	CRR073306	Third green 1	1.766
	CRR073307	Third green 2	0.570
	CRR073308	Third green 3	2.193
	CRR073309	Second white 1	1.366
	CRR073310	Second white 2	0.810
	CRR073311	Second white 3	0.748
	CRR073312	Silver flowering 1	0.354
	CRR073313	Silver flowering 2	1.480
	CRR073314	Silver flowering 3	0.256
	CRR073315	Gold flowering 1	36.915
	CRR073316	Gold flowering 2	70.932
	CRR073317	Gold flowering 3	79.822
	CRR073318	Tawny withering 1	13.471
	CRR073319	Tawny withering 2	5.430
	CRR073320	Tawny withering 3	7.921