Gene detail

Detail information of GWHGAAZE032539

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529511.1	0	abc transporter, putative [Ricinus communis]
COG	YP_181264.1	6E-46	daunorubicin resistance ABC transporter, ATP-binding protein
Swissprot	tr\|Q84M24\|AB1A_ARATH	0	ABC transporter A family member 1
trEMBL	tr\|B9SU42\|B9SU42_RICCO	0	Abc transporter, putative {ECO:0000313\|EMBL:EEF32880.1}
TAIR10	AT2G41700.1	0	ATP-binding cassette A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4324766	4352264	+
GWHAAZE00000021	mRNA	4324766	4352264	+
GWHAAZE00000021	exon	4324766	4324864	+
GWHAAZE00000021	exon	4324947	4325059	+
GWHAAZE00000021	exon	4325334	4325440	+
GWHAAZE00000021	exon	4326213	4326275	+
GWHAAZE00000021	exon	4327828	4327914	+
GWHAAZE00000021	exon	4332949	4333047	+
GWHAAZE00000021	exon	4333128	4333312	+
GWHAAZE00000021	exon	4333578	4333632	+
GWHAAZE00000021	exon	4333744	4333806	+
GWHAAZE00000021	exon	4334458	4335165	+
GWHAAZE00000021	exon	4335582	4335760	+
GWHAAZE00000021	exon	4335971	4336181	+
GWHAAZE00000021	exon	4337302	4337385	+
GWHAAZE00000021	exon	4340566	4340662	+
GWHAAZE00000021	exon	4342719	4342846	+
GWHAAZE00000021	exon	4342925	4343029	+
GWHAAZE00000021	exon	4343571	4343717	+
GWHAAZE00000021	exon	4344743	4344878	+
GWHAAZE00000021	exon	4351141	4351220	+
GWHAAZE00000021	exon	4351577	4351684	+
GWHAAZE00000021	exon	4351995	4352145	+
GWHAAZE00000021	exon	4352224	4352264	+
GWHAAZE00000021	five_prime_UTR	4324766	4324838	+
GWHAAZE00000021	CDS	4324839	4324864	+
GWHAAZE00000021	CDS	4324947	4325059	+
GWHAAZE00000021	CDS	4325334	4325440	+
GWHAAZE00000021	CDS	4326213	4326275	+
GWHAAZE00000021	CDS	4327828	4327914	+
GWHAAZE00000021	CDS	4332949	4333047	+
GWHAAZE00000021	CDS	4333128	4333312	+
GWHAAZE00000021	CDS	4333578	4333632	+
GWHAAZE00000021	CDS	4333744	4333806	+
GWHAAZE00000021	CDS	4334458	4335165	+
GWHAAZE00000021	CDS	4335582	4335760	+
GWHAAZE00000021	CDS	4335971	4336181	+
GWHAAZE00000021	CDS	4337302	4337385	+
GWHAAZE00000021	CDS	4340566	4340662	+
GWHAAZE00000021	CDS	4342719	4342846	+
GWHAAZE00000021	CDS	4342925	4343029	+
GWHAAZE00000021	CDS	4343571	4343717	+
GWHAAZE00000021	CDS	4344743	4344878	+
GWHAAZE00000021	CDS	4351141	4351220	+
GWHAAZE00000021	CDS	4351577	4351684	+
GWHAAZE00000021	CDS	4351995	4352145	+
GWHAAZE00000021	CDS	4352224	4352264	+

Transcript Sequence
>GWHTAAZE032577 TGAAGTGAATGATAAGCATTCTGAAGAGAAGGCCAGTTTTTCTGGACCTGCTACTGAAGCCATAAGCTTAGATATGAAGCAGCAAGAGCTGGATGGCAGATGCATACAAATTAGGAATCTGCACAAGGTGTATTCTACTAAGAAGGGGAAGTGTTGTGCTGTTAACTCTTTAGACCTCACATTATATGAAAATCAGATTCTTGCGCTTCTAGGACATAATGGAGCTGGTAAAAGCACGACAATATCTATGCTTGTTGGCCTTCTTCCTCCTACTTCTGGAGATGCTTTGGTTTTTGGAAATAATATTTTAACGGACATGGATGAGATACGGAAGAATTTGGGTGTGTGCCCTCAGTATGATATTCTTTTCCCAGAATTAACAGTGAAGGAGCATTTGGAAATATTTGCGATTTTGAAGGGGGTGAATGAAAACTCTCTGGAGACTAGTGTCACTGAAATGGTTGATGAAGTGGGATTGGCAGATAAACTCAATACTGTTGTGAGGTCTCTTTCTGGAGGAATGAAAAGAAAACTGTCCCTTGGCATTGCTCTGATCGGAAATAGTAAGGTTATTGTTCTCGATGAACCTACTAGCGGAATGGATCCATATTCAATGCGATTGACATGGCAGTTGATTAAAAGAATAAAGAAAGGGAGAATAATATTACTAACTACACACTCCATGGATGAAGCTGATGTGCTAGGAGATCGAATAGCCATTATGGCCGACGGCTCTTTAAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCACCAGTATGGGGTTGGTTATACTCTTACTTTGGTGAAGACTCTGCCTGGTGCCTCTATAGCTGCTGAGATTGTTTACCGTCATATTCCTTCAGCAACATGCGTTGGAACTGAGATTTCCTTCAAGCTTCCTCTCGCTTCCTCGCCTTCTTTTGAAAGCATGTTTAGAGAAATTGAACTCTGCATGAGAATATCAAATACCAACTCTGAAGCCACCGGCAGCGAGGATGGACATTATCTTGGCATTGAGAGCTATGGTATCTCTGTCACAACTCTAGAAGAGGTATTCTTGAGGGTTGCCGGCTGCGATATCAATGAAGCCGAGTGTCTTGAGGAGAAAAAAGCCCTAGATTCATCTGATTCCGTTGTTTCACAATCAAGCCTTAGTTATGAACCAAAGAAAAGTCATGATTCGAAACTATGTGGAAACTATATGATGGTCGTTGGGCTCTTTTTTACCATGGTGGGGAAAACTATCAGCCTTGTTTTGGCCGCTGTCCTAAGTTTCTTAGGTTCCTTAAGCTTGCATTGCTGTTGCTCTTGTATACTTACAAGGTCTACATTTTGGAAACATTCTAAAGCATTACTCATAAAGAGGGCAATATCAGCTCGAAGAGACCGGAAAACAATTGTTTTCCAGCTGTTAATTCCTGCTGTTTTCTTGTTTTTCGGCTTACTCTTTCTCAAGCTTAGGTCACACCCTGATCAGATTTCTGTGACCTTCACAACATCGAATTTTAATCCTCTATTAAGTGGCGGCGGCGGTGGTGGTCCAATTCCTTTTGATCTGTCGTTGCCTATTTCACAAGAGGTTGCAAATTATATACAAGGGGGTTGGGTACAAAGGTTTAGATGGAGCACATATAGATTCCCCAACTCAGAAAAAGCACTGACAGATGCTATTGAGGCAGCAGGACCGACTTTGGGACCAGTCCTACTTTCCATGAGCGAATATCTAATGTCTAGCTTTAATGAATCTTATCAGTCAAGATACGGGGCAGTTATAATGGATGATCAGAAGGATGATGGGAGTCTTGGATACACTATTCTACACAACAGTTCTTGTCAGCATGCAGCTCCAACCTTTATTAATTTAATGAATGCAGCCATTCTTCGATTTGCTACTCTTAATGAGAATATGACTATACGAACGCGTAATCATCCATTACCCATGACAGAAAGCCAGCGCATGCAACACCATGATCTGGATGCATTCTCAGCTGCAGTTGTTGTTAGCATTGCCTTCTCCTTTATTCCTGCCTCATTTGCCGTTGCTATTGTGAAGGTATCCGTACTTTCATATTGGGCATCAACATACATATGGGACTTCATCAGCTTCTTATTTCCGTCATCTTTTGCAATAATTCTCTTTTACATATTTGGTCTGGAGCAATTCATTGGAACTGCCTCGGTCTTGCCAACAGTCCTTATGCTTTTGGAATATGGACTAGCTGTTGCATCATCTACATATTGCCTCACTTTTTTCTTTTCTGAACACAGCATGGCACAGAATGTGGTCCTCTTGGTCCACTTTTTCACCGGTCTAATTCTTATGGTTATATCATTCATCATGGGACTTATACAGACAACTGCAAGTGCAAATTCTTTTCTCAAGAACTTTTTCAGATTATCGCCTGGATTTTGCTTAGCTGATGGACTAGCTTCACTAGCTCTTTTACGGCAAGATATGAAAACTGGATCAAATGATGATGTTTTGGACTGGAATGTTACTGGTGCCTCTATATGTTATTTGGCTGTTGAGGTCTATCCTGGTGGGAGGCACTATGACACAAAAACTGCAGTTCATTCATTGACCTTCTCAGTTCAAGAAGGGGAATGTTTTGGCTTTCTAGGAACAAATGGAGCAGGGAAGACTACAACGCTGTCCATGCTGTCTGGAGAAGAAACTCCAACTGGTGGGACTGCATTTGTTTTCGGTAAAGATATATGTTTGTACCCGAAGGCTATTCGCCAGCATATTGGTTACTGCCCACAATTTGATGCTCTGCTAGAGTTTCTAACTGTGCAAGAACACCTTGAGCTTTATGGAAGAATAAAAGGAGTCCCAGATTACAAGCTGGATGATGTGGTTACGGAAAAGTTACTAGAATTTGACTTGATGAAGCACGCTAATAAACCATCATTTGCCCTAAGTGGAGGAAACAAGCGGAAATTATCTGTTGCAATTGCAATGATTGGAGATCCCCCTATAGTCATTCTTGATGAGCCATCTACAGCATGTCGAGATACTTTCAGACTTCAAATTTACCACCACTGA

Network for GWHGAAZE032539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	31	174	4.30E-30
PF12698.8	ABC2_membrane_3	440	819	2.60E-25
PF00005.28	ABC_tran	834	976	7.90E-25

Protein Sequence

>GWHPAAZE032559
MKQQELDGRCIQIRNLHKVYSTKKGKCCAVNSLDLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGNNILTDMDEIRKNLGVCPQYDILFPELTVKEHLEIFAILKGVNENSLETSVTEMVDEVGLADKLNTVVRSLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMADGSLKCCGSSLFLKHQYGVGYTLTLVKTLPGASIAAEIVYRHIPSATCVGTEISFKLPLASSPSFESMFREIELCMRISNTNSEATGSEDGHYLGIESYGISVTTLEEVFLRVAGCDINEAECLEEKKALDSSDSVVSQSSLSYEPKKSHDSKLCGNYMMVVGLFFTMVGKTISLVLAAVLSFLGSLSLHCCCSCILTRSTFWKHSKALLIKRAISARRDRKTIVFQLLIPAVFLFFGLLFLKLRSHPDQISVTFTTSNFNPLLSGGGGGGPIPFDLSLPISQEVANYIQGGWVQRFRWSTYRFPNSEKALTDAIEAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAVIMDDQKDDGSLGYTILHNSSCQHAAPTFINLMNAAILRFATLNENMTIRTRNHPLPMTESQRMQHHDLDAFSAAVVVSIAFSFIPASFAVAIVKVSVLSYWASTYIWDFISFLFPSSFAIILFYIFGLEQFIGTASVLPTVLMLLEYGLAVASSTYCLTFFFSEHSMAQNVVLLVHFFTGLILMVISFIMGLIQTTASANSFLKNFFRLSPGFCLADGLASLALLRQDMKTGSNDDVLDWNVTGASICYLAVEVYPGGRHYDTKTAVHSLTFSVQEGECFGFLGTNGAGKTTTLSMLSGEETPTGGTAFVFGKDICLYPKAIRQHIGYCPQFDALLEFLTVQEHLELYGRIKGVPDYKLDDVVTEKLLEFDLMKHANKPSFALSGGNKRKLSVAIAMIGDPPIVILDEPSTACRDTFRLQIYHH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05643	ABCA3	ABC transporters	map02010

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.803
	SRR3591706	second leaf	6.128
	SRR3591707	mature leaf	8.074
	SRR3591708	Shoot apex	8.213
	SRR3591709	Stem	40.045
	SRR3591710	White floral bud	22.337
	SRR3591711	White flower	28.704
	SRR3591712	Green floral bud	16.467
	SRR3591713	Yellow flower	24.717
SRP173429	SRR8316895	Juvenile bud stage	11.432
	SRR8316896	Juvenile bud stage	16.708
	SRR8316897	Juvenile bud stage	6.415
	SRR8316894	Third green stage	8.113
	SRR8316900	Third green stage	17.237
	SRR8316901	Third green stage	15.203
	SRR8316898	Complete white stage	4.765
	SRR8316899	Complete white stage	15.507
	SRR8316903	Complete white stage	13.730
	SRR8316902	Silver flowering stage	9.068
	SRR8316904	Silver flowering stage	17.012
	SRR8316905	Silver flowering stage	7.811
	SRR8316906	Gold flowering stage	19.703
	SRR8316907	Gold flowering stage	17.525
	SRR8316908	Gold flowering stage	21.090
SRP132670	SRR6706286	Control	13.578
	SRR6706287	Light intensity 50%	14.007
	SRR6706288	Light intensity 20%	14.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.534
	CNS0095593	Slightly white alabastrum(diploid) 2	4.065
	CNS0095594	Slightly white alabastrum(diploid) 3	4.654
	CNS0095595	Whole white alabastrum(diploid) 2	4.696
	CNS0095596	Whole white alabastrum(diploid) 3	3.846
	CNS0095597	Whole white alabastrum(diploid) 4	4.816
	CNS0095598	Silvery flower (diploied) 1	9.735
	CNS0095599	Silvery flower (diploied) 2	7.132
	CNS0095600	Silvery flower (diploied) 3	24.640
	CNS0095601	Golden flower (diploid) 1	8.487
	CNS0095602	Golden flower (diploid) 2	19.992
	CNS0095603	Golden flower (diploid) 3	20.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.586
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.390
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.130
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.363
	CNS0095610	Silvery flower (tetraploid) 1	17.671
	CNS0095611	Silvery flower (tetraploid) 2	17.395
	CNS0095612	Silvery flower (tetraploid) 3	12.803
	CNS0095613	Golden flower (tetraploid) 1	6.845
	CNS0095614	Golden flower (tetraploid) 2	17.244
	CNS0095615	Golden flower (tetraploid) 3	29.981
CRA001975	CRR073297	Stem 1	13.741
	CRR073298	Stem 2	11.481
	CRR073299	Stem 3	8.175
	CRR073300	Leaf 1	10.896
	CRR073301	Leaf 2	7.250
	CRR073302	Leaf 3	6.927
	CRR073303	Juvenile bud 1	3.237
	CRR073304	Juvenile bud 2	2.484
	CRR073305	Juvenile bud 3	8.733
	CRR073306	Third green 1	1.569
	CRR073307	Third green 2	1.719
	CRR073308	Third green 3	1.544
	CRR073309	Second white 1	2.009
	CRR073310	Second white 2	2.590
	CRR073311	Second white 3	3.155
	CRR073312	Silver flowering 1	4.036
	CRR073313	Silver flowering 2	3.837
	CRR073314	Silver flowering 3	4.200
	CRR073315	Gold flowering 1	1.076
	CRR073316	Gold flowering 2	2.976
	CRR073317	Gold flowering 3	2.156
	CRR073318	Tawny withering 1	10.193
	CRR073319	Tawny withering 2	7.816
	CRR073320	Tawny withering 3	8.540