Gene detail

Detail information of GWHGAAZE032542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284228.1	0	PREDICTED: mitochondrial ribosome-associated GTPase 1 [Vitis vinifera]
COG	YP_005034798.1	1E-25	putative GTPase
trEMBL	tr\|F6HKV4\|F6HKV4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55111.1}
TAIR10	AT2G41670.1	1E-119	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4377631	4390075	-
GWHAAZE00000021	mRNA	4377631	4390075	-
GWHAAZE00000021	exon	4389920	4390075	-
GWHAAZE00000021	exon	4388904	4389008	-
GWHAAZE00000021	exon	4386891	4386959	-
GWHAAZE00000021	exon	4386635	4386760	-
GWHAAZE00000021	exon	4379681	4379777	-
GWHAAZE00000021	exon	4378115	4378332	-
GWHAAZE00000021	exon	4377631	4377885	-
GWHAAZE00000021	CDS	4389920	4390075	-
GWHAAZE00000021	CDS	4388904	4389008	-
GWHAAZE00000021	CDS	4386891	4386959	-
GWHAAZE00000021	CDS	4386635	4386760	-
GWHAAZE00000021	CDS	4379681	4379777	-
GWHAAZE00000021	CDS	4378115	4378332	-
GWHAAZE00000021	CDS	4377631	4377885	-

Transcript Sequence
>GWHTAAZE032580 ATGGGAGGAGTGAGAAAGATAGTGAAGAAGGGACTGGGAGAGATGATGGGTGGCGGAGCCATCAACTGGTTCCCCGGCCACATGGCTGCCGCCACTCGCGCCATCCGCCAACGTCTCAAGCTTGCCGATCTTGTCATCGAAGTCCGCGACGCTCGCATACCATTGTCCTCTGCAAATGAAGATCTTCAGCCTCTGCTCTCCGGCAAACGGCGTGTAATCGCACTCAACAAAAAGGACTTGGCCAATCCCAACATCATGCATCTTCTTGAGCTTGTGGAGTTCAAGCTGAAGGAGAGGATTTCAAGGGAACCTACGCTCCTAGTTATGGTGTCAGCTATCGGTAGGCAACTCCTCTCTAGCAGTGATAATTTTAGATTTATCTTAGTGCAGCAGAAGGCGAAGCGAGCTACAGTAGGACCTTTACCTGGTGTTACTCAAGATATTGCAGGATTCAAGATCGCAAATCAACCTAGCATATATGTTTTGGACACTCCCGGAGTGTTGGTTCCAAGCATACCAGGCATAGAAACAGGGCTGAAGTTGGCTCTAGCAGGGTCTGTGAAGGATTCAGTGGTTGGTGAAGAGCGTATTGCTCAATATTTACTGGCAGTTTTGAACACTCGGAACACCCCTCTCCACTGGAGGCACTTGAGAGAGAGAAAGGTGGAGCGGATTCCAAATGATTATAATGATAAACATGAGTATAATCTAAAGGATCTTCTGCCCCAAAGGAGGAAACCTCCAAATGCATCTGATGTCCATTACATTGAGGATCTAGTAACCGAGGTCCAACGTGCACTATATGCAACACTCTTTGAATTCAGTGGAAATTTGGAGGATGAAAGCGAATTGGAGAGTTTGATAGAGCAGCAGTTTGAAGTACTGCAGAAGGCATTACAGATTCCTCACAAGGCATCAGAGGCTCGGACTATGGTATCGAAGAAGTTTCTGACTTTATTTAGGACCGGTAAACTTGGTCCTTTCATCCTTGATGATGTACCCGACACCTCTAATTCTACATCTTAA

Network for GWHGAAZE032542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0294

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.24	MMR_HSR1	134	215	3.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.563
	SRR3591706	second leaf	3.120
	SRR3591707	mature leaf	4.764
	SRR3591708	Shoot apex	8.842
	SRR3591709	Stem	6.131
	SRR3591710	White floral bud	4.411
	SRR3591711	White flower	8.599
	SRR3591712	Green floral bud	7.632
	SRR3591713	Yellow flower	8.634
SRP173429	SRR8316895	Juvenile bud stage	3.912
	SRR8316896	Juvenile bud stage	5.689
	SRR8316897	Juvenile bud stage	2.468
	SRR8316894	Third green stage	3.009
	SRR8316900	Third green stage	10.804
	SRR8316901	Third green stage	8.094
	SRR8316898	Complete white stage	1.878
	SRR8316899	Complete white stage	15.680
	SRR8316903	Complete white stage	3.264
	SRR8316902	Silver flowering stage	1.984
	SRR8316904	Silver flowering stage	2.917
	SRR8316905	Silver flowering stage	1.564
	SRR8316906	Gold flowering stage	5.226
	SRR8316907	Gold flowering stage	3.307
	SRR8316908	Gold flowering stage	5.840
SRP132670	SRR6706286	Control	7.182
	SRR6706287	Light intensity 50%	6.682
	SRR6706288	Light intensity 20%	8.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.457
	CNS0095593	Slightly white alabastrum(diploid) 2	6.766
	CNS0095594	Slightly white alabastrum(diploid) 3	5.708
	CNS0095595	Whole white alabastrum(diploid) 2	4.149
	CNS0095596	Whole white alabastrum(diploid) 3	4.756
	CNS0095597	Whole white alabastrum(diploid) 4	4.641
	CNS0095598	Silvery flower (diploied) 1	4.611
	CNS0095599	Silvery flower (diploied) 2	4.551
	CNS0095600	Silvery flower (diploied) 3	4.235
	CNS0095601	Golden flower (diploid) 1	6.022
	CNS0095602	Golden flower (diploid) 2	4.825
	CNS0095603	Golden flower (diploid) 3	4.598
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.561
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.144
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.218
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.096
	CNS0095610	Silvery flower (tetraploid) 1	7.807
	CNS0095611	Silvery flower (tetraploid) 2	8.011
	CNS0095612	Silvery flower (tetraploid) 3	2.611
	CNS0095613	Golden flower (tetraploid) 1	4.026
	CNS0095614	Golden flower (tetraploid) 2	5.376
	CNS0095615	Golden flower (tetraploid) 3	1.477
CRA001975	CRR073297	Stem 1	7.441
	CRR073298	Stem 2	6.647
	CRR073299	Stem 3	4.249
	CRR073300	Leaf 1	6.507
	CRR073301	Leaf 2	8.338
	CRR073302	Leaf 3	5.084
	CRR073303	Juvenile bud 1	6.689
	CRR073304	Juvenile bud 2	5.728
	CRR073305	Juvenile bud 3	5.526
	CRR073306	Third green 1	0.159
	CRR073307	Third green 2	0.091
	CRR073308	Third green 3	0.379
	CRR073309	Second white 1	2.360
	CRR073310	Second white 2	1.020
	CRR073311	Second white 3	0.443
	CRR073312	Silver flowering 1	0.296
	CRR073313	Silver flowering 2	0.861
	CRR073314	Silver flowering 3	0.748
	CRR073315	Gold flowering 1	5.978
	CRR073316	Gold flowering 2	8.244
	CRR073317	Gold flowering 3	4.656
	CRR073318	Tawny withering 1	3.700
	CRR073319	Tawny withering 2	3.838
	CRR073320	Tawny withering 3	4.551