Detail information of GWHGAAZE032552


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284342.13.54697E-75PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
COGYP_005839424.11E-11transcription initiation factor TFB
Swissprottr|Q9SS44|TF2B2_ARATH9E-75Transcription initiation factor IIB-2
trEMBLtr|D7THT6|D7THT6_VITVI1E-75Putative uncharacterized protein {ECO:0000313|EMBL:CBI29812.3}
TAIR10AT3G10330.19E-61Cyclin-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene45443814544746-
GWHAAZE00000021mRNA45443814544746-
GWHAAZE00000021exon45443814544746-
GWHAAZE00000021CDS45443814544746-
Transcript Sequence

Network for GWHGAAZE032552

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08271.13TF_Zn_Ribbon4461.30E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03124TFIIB, GTF2B, SUA7, tfb Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0070897biological_processtranscription preinitiation complex assembly

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.926
SRR3591706second leaf9.124
SRR3591707mature leaf7.318
SRR3591708Shoot apex15.948
SRR3591709Stem25.079
SRR3591710White floral bud30.572
SRR3591711White flower17.134
SRR3591712Green floral bud25.337
SRR3591713Yellow flower14.434
SRP173429 SRR8316895Juvenile bud stage 16.648
SRR8316896Juvenile bud stage 23.957
SRR8316897Juvenile bud stage 12.459
SRR8316894Third green stage 11.435
SRR8316900Third green stage 28.080
SRR8316901Third green stage 27.837
SRR8316898Complete white stage 19.198
SRR8316899Complete white stage 33.084
SRR8316903Complete white stage 41.539
SRR8316902Silver flowering stage12.449
SRR8316904Silver flowering stage24.715
SRR8316905Silver flowering stage11.047
SRR8316906Gold flowering stage 29.097
SRR8316907Gold flowering stage 32.333
SRR8316908Gold flowering stage 22.442
SRP132670SRR6706286Control41.473
SRR6706287Light intensity 50%40.348
SRR6706288Light intensity 20%41.691
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.019
CNS0095593Slightly white alabastrum(diploid) 29.877
CNS0095594Slightly white alabastrum(diploid) 314.810
CNS0095595Whole white alabastrum(diploid) 213.642
CNS0095596Whole white alabastrum(diploid) 315.295
CNS0095597Whole white alabastrum(diploid) 411.500
CNS0095598Silvery flower (diploied) 17.825
CNS0095599Silvery flower (diploied) 211.986
CNS0095600Silvery flower (diploied) 326.512
CNS0095601Golden flower (diploid) 17.622
CNS0095602Golden flower (diploid) 215.082
CNS0095603Golden flower (diploid) 313.181
CNS0095604Slightly white alabastrum(tetraploid) 113.708
CNS0095605Slightly white alabastrum(tetraploid) 211.004
CNS0095606Slightly white alabastrum(tetraploid) 311.607
CNS0095607Whole white alabastrum(tetraploid) 114.019
CNS0095608Whole white alabastrum(tetraploid) 210.118
CNS0095609Whole white alabastrum(tetraploid) 317.426
CNS0095610Silvery flower (tetraploid) 117.624
CNS0095611Silvery flower (tetraploid) 218.657
CNS0095612Silvery flower (tetraploid) 333.711
CNS0095613Golden flower (tetraploid) 112.299
CNS0095614Golden flower (tetraploid) 219.854
CNS0095615Golden flower (tetraploid) 317.574
CRA001975CRR073297Stem 132.711
CRR073298Stem 227.403
CRR073299Stem 338.698
CRR073300Leaf 143.441
CRR073301Leaf 235.199
CRR073302Leaf 344.655
CRR073303Juvenile bud 154.468
CRR073304Juvenile bud 261.053
CRR073305Juvenile bud 358.726
CRR073306Third green 139.615
CRR073307Third green 248.510
CRR073308Third green 340.792
CRR073309Second white 124.599
CRR073310Second white 236.970
CRR073311Second white 338.581
CRR073312Silver flowering 127.707
CRR073313Silver flowering 234.427
CRR073314Silver flowering 347.982
CRR073315Gold flowering 18.050
CRR073316Gold flowering 26.170
CRR073317Gold flowering 31.698
CRR073318Tawny withering 126.897
CRR073319Tawny withering 218.099
CRR073320Tawny withering 330.076