Gene detail

Detail information of GWHGAAZE032587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654529.1	0	PREDICTED: pre-mRNA-processing protein 40C isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9LT25\|PR40C_ARATH	0	Pre-mRNA-processing protein 40C
trEMBL	tr\|F6HFZ8\|F6HFZ8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51191.1}
TAIR10	AT3G19840.1	3E-141	pre-mRNA-processing protein 40C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000023	gene	423102	439531	+
GWHAAZE00000023	mRNA	423102	439531	+
GWHAAZE00000023	exon	423102	423582	+
GWHAAZE00000023	exon	424197	424360	+
GWHAAZE00000023	exon	424717	424754	+
GWHAAZE00000023	exon	425219	425253	+
GWHAAZE00000023	exon	425564	425691	+
GWHAAZE00000023	exon	427404	427895	+
GWHAAZE00000023	exon	429563	429646	+
GWHAAZE00000023	exon	433331	433471	+
GWHAAZE00000023	exon	433593	433699	+
GWHAAZE00000023	exon	435090	435213	+
GWHAAZE00000023	exon	435606	435749	+
GWHAAZE00000023	exon	437081	437227	+
GWHAAZE00000023	exon	437972	438094	+
GWHAAZE00000023	exon	439268	439531	+
GWHAAZE00000023	CDS	423102	423582	+
GWHAAZE00000023	CDS	424197	424360	+
GWHAAZE00000023	CDS	424717	424754	+
GWHAAZE00000023	CDS	425219	425253	+
GWHAAZE00000023	CDS	425564	425691	+
GWHAAZE00000023	CDS	427404	427895	+
GWHAAZE00000023	CDS	429563	429646	+
GWHAAZE00000023	CDS	433331	433471	+
GWHAAZE00000023	CDS	433593	433699	+
GWHAAZE00000023	CDS	435090	435213	+
GWHAAZE00000023	CDS	435606	435749	+
GWHAAZE00000023	CDS	437081	437227	+
GWHAAZE00000023	CDS	437972	438094	+
GWHAAZE00000023	CDS	439268	439531	+

Transcript Sequence
>GWHTAAZE032625 ATGGCCCCACCTACATTCTGGATGCCTACTGCCCCATCTTTTCAACTGCCCCAAGGACTGCCAGCTGGCGCCCCTAGAATAGCCCCTTCTGTACCATTATCATCTACTACGACTGTCCCATCTGCATCTGTTAATATAAACTCTTCTTCACCTGCTGTCCTTAGACCCATTATGCAGGCCTCTCCTGTTCCACCCAGTCCAGCTGTTCAGCACCAATCTTATCCTCCCTATCAAGCTCCAATGGCGGTGCACCCTCAGGGACTATGGTTGCCGCCCCAACAGTATGGCGGCTTGCCAAGACCACCACTTTTATCATACCCTCCTCCCTTTCCAGGTCCCTTCCCTTTGCCAACTCATAGCTTTCAACCTCCTGGTGTCACTCCAATGGGACCTCCTAGTGGAACAACCACGCCTGCAGTGGCTGTTGGTAATCAGTTGGCGGTTGGTTCTGGAATGCAGCCTGAATTACCTCCAGGAGTTGATAACAGTAAACATGCCAATGATGTTAGTGTCAACATGGGATCTGCTGTCAGTGAACAATTAGATGCATGGACAGCCCACAGGACTGAATCTGGAGCTGTATACTACTATAATGCTTTGACGGGAGAGTCTACTTATGAGAAACCTGCTGGGTTTAAGGGACAGCCTGATAAAGTAATTGCGCAGCCGACTCCAATATCATGCATTTTGATCTGGTTGAGTGGTATTGCTCAAGTATTTTCCGTTCCCCCACTACTCCCAACATTTATAGATTTTTACATGCTTAGGGAGAAGCTGGCTGGCACAGATTGGGCGTTGGTCACTACAAATGATGGTAAAAAATATTACTACAACACTAAAACCAAGTCAAGCAGCTGGCAAATACCGACTGAGGTGACGGAGTTGAGAAAGAAGCAGGACGATGCTGATGGTGGTTTGAAAGAACAATCAATGTCAGTGCCAAACTCTAATAACTTATCTGATAAAGGATCTGCATCTGCTCCTATTAGTTTGAGTGCCCCTGCTGTTAACACAGGTGGTCGTGATGCCACAGCCCTTAGAACCACCTCAGTTGTCCCATCATCTGCACTGGATCTGATAAAAAAGAAGTTACAGGACCCTGGTGCTCCTGCTACTTCCTCCCCTTTATCAACTTCATCAGGGGCAGCTGCACCAGAGTTGAATGGCGGCTCAAGAGCAGTTGTTGACGGTTCAGTGAAGGGTCAGCAAAGTGAGAATAATAGCAAAGATAAGCTTAAAGATGCCAATGGTGATGATGGTAATTTGTCCGACTCTTCTTCAGATTCAGAGGATGTGGATAGCGGACCGACCAAGGAGGAGTGTATAATCCAATTCAAGGAGATGCTGAAGGAGCGGGGAGTGGCACCATTCTCGAAATGGGAGAAGGAGCTTCCAAAGATAGTGTTTGATCCACGGTTCAAGGCAATTCCAGGTTACAGTGCTCGTAGAGCCCTTTTTGAGCACTATGTTAGAACACGCGCTGAAGAAGAACGCAAGGAAAAACGAGCAGCACAAAAGGCTGCAATTGAGGGGTTCAAGCAGTTGCTGGAAGAGGCAAAGGAGGATATCAATCACAACACTGATTATCAAACATTCAGAAGGAAATGGGGTTCTGATCCACGATTTGAAGCCATAGAACGGAAAGAGCGTGAAGTTTTATTGAATGAAAGGGTCCTTCCTCTTAAAAAAGCTGCTCAAGAAAAAGCCCAAGCTGAACGTGCAGCTGCTGTATCTAGTTTCATGTCCATGCTTCGTGACAAAGGAGATATTACTACCAGTTCTCGTTGGTCCAAGATGAAGGACGGCCTAAGAAATGACCCTCGCTACAAATCCGTTAAGCATGAGGACAGGGAGGCTTTATTTAATGAATACATTTCTGAACTTAAGTCTGCTGAAGAGGAAGCAGAAAGAGTGGCAAAGGCCAAACGGGAAGAGGAGGAGAAACTGAAGGAAAGAGAGCGAGCTTTGAGAAAGCGGAAAGAAAGAGAAGAACAGGAAGTGGAGCGGGTGCGTTCAAAAGCTCGCAGAAAGGAAGCTGTTGAGTCTTATCAGGCTTTACTTGTTGAAACAATTAAAGATCCTCAGGTGTCTTGGACGGAATCAAAAGCTAAGCTTGAGAAGGATCCTCAAGGTCGTGCTGCCACTTCTTATTTGGATCAGTCAGACTTCGAAAAGCTTTTCCGGGAGCATGTTAAGTTACTCCACGAGCGGTGTGTGCATGAGTTCAGAACTCTGTTAACCGAGACGATAACTGCCGAAGCGGCTGCCCAAGAAACAGAAGATGGCAAAACAGTTTTCAATTCTTGGTCGACGGCCAAACGCCTACTTAAGGCTGATACTAGGTATGCGAAGATGCCGAGGAAAGAGAGAGAATCATTGTGGCGCCGACATGTGGACGAGGTGCAGCGTAGGCAACAGAAGTTAGCAGCAATTGATAAAGAGGCAGAGAAATCATACAAAAGGAAGAGGTAG

Network for GWHGAAZE032587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.27	WW	183	209	2.70E-08
PF01846.20	FF	444	489	6.30E-11
PF01846.20	FF	508	556	1.60E-07
PF01846.20	FF	576	624	4.00E-13
PF01846.20	FF	678	730	0.00019
PF01846.20	FF	741	797	4.90E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12824	TCERG1, CA150	Spliceosome	map03040
K12824	TCERG1, CA150	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.338
	SRR3591706	second leaf	12.637
	SRR3591707	mature leaf	14.393
	SRR3591708	Shoot apex	21.911
	SRR3591709	Stem	20.329
	SRR3591710	White floral bud	18.669
	SRR3591711	White flower	22.522
	SRR3591712	Green floral bud	17.378
	SRR3591713	Yellow flower	17.451
SRP173429	SRR8316895	Juvenile bud stage	16.606
	SRR8316896	Juvenile bud stage	22.090
	SRR8316897	Juvenile bud stage	9.360
	SRR8316894	Third green stage	9.230
	SRR8316900	Third green stage	19.854
	SRR8316901	Third green stage	21.468
	SRR8316898	Complete white stage	5.228
	SRR8316899	Complete white stage	18.000
	SRR8316903	Complete white stage	14.439
	SRR8316902	Silver flowering stage	8.666
	SRR8316904	Silver flowering stage	11.851
	SRR8316905	Silver flowering stage	5.930
	SRR8316906	Gold flowering stage	19.600
	SRR8316907	Gold flowering stage	19.216
	SRR8316908	Gold flowering stage	19.505
SRP132670	SRR6706286	Control	24.611
	SRR6706287	Light intensity 50%	23.457
	SRR6706288	Light intensity 20%	24.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.595
	CNS0095593	Slightly white alabastrum(diploid) 2	14.863
	CNS0095594	Slightly white alabastrum(diploid) 3	16.665
	CNS0095595	Whole white alabastrum(diploid) 2	13.219
	CNS0095596	Whole white alabastrum(diploid) 3	10.633
	CNS0095597	Whole white alabastrum(diploid) 4	12.088
	CNS0095598	Silvery flower (diploied) 1	22.025
	CNS0095599	Silvery flower (diploied) 2	18.251
	CNS0095600	Silvery flower (diploied) 3	17.442
	CNS0095601	Golden flower (diploid) 1	21.357
	CNS0095602	Golden flower (diploid) 2	20.955
	CNS0095603	Golden flower (diploid) 3	19.804
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.916
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.685
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.229
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.037
	CNS0095610	Silvery flower (tetraploid) 1	20.403
	CNS0095611	Silvery flower (tetraploid) 2	17.103
	CNS0095612	Silvery flower (tetraploid) 3	14.932
	CNS0095613	Golden flower (tetraploid) 1	11.957
	CNS0095614	Golden flower (tetraploid) 2	17.703
	CNS0095615	Golden flower (tetraploid) 3	18.820
CRA001975	CRR073297	Stem 1	29.241
	CRR073298	Stem 2	27.440
	CRR073299	Stem 3	19.343
	CRR073300	Leaf 1	29.049
	CRR073301	Leaf 2	29.633
	CRR073302	Leaf 3	14.989
	CRR073303	Juvenile bud 1	18.011
	CRR073304	Juvenile bud 2	10.116
	CRR073305	Juvenile bud 3	26.163
	CRR073306	Third green 1	6.431
	CRR073307	Third green 2	4.033
	CRR073308	Third green 3	5.338
	CRR073309	Second white 1	4.279
	CRR073310	Second white 2	6.282
	CRR073311	Second white 3	8.359
	CRR073312	Silver flowering 1	6.869
	CRR073313	Silver flowering 2	8.593
	CRR073314	Silver flowering 3	5.650
	CRR073315	Gold flowering 1	7.223
	CRR073316	Gold flowering 2	16.202
	CRR073317	Gold flowering 3	4.426
	CRR073318	Tawny withering 1	16.014
	CRR073319	Tawny withering 2	16.910
	CRR073320	Tawny withering 3	16.760