Detail information of GWHGAAZE032596


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007040633.11.28534E-09Uncharacterized protein TCM_016547 [Theobroma cacao]
trEMBLtr|A0A061GDM2|A0A061GDM2_THECC5E-10Uncharacterized protein {ECO:0000313|EMBL:EOY25134.1}
TAIR10AT4G11770.10.00002Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000024gene182439184559+
GWHAAZE00000024mRNA182439184559+
GWHAAZE00000024exon182439182603+
GWHAAZE00000024exon183039184559+
GWHAAZE00000024CDS182439182603+
GWHAAZE00000024CDS183039184559+
Transcript Sequence

Network for GWHGAAZE032596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0227


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.904
SRR3591706second leaf11.111
SRR3591707mature leaf10.941
SRR3591708Shoot apex16.923
SRR3591709Stem13.081
SRR3591710White floral bud17.651
SRR3591711White flower20.582
SRR3591712Green floral bud22.689
SRR3591713Yellow flower13.991
SRP173429 SRR8316895Juvenile bud stage 30.915
SRR8316896Juvenile bud stage 38.402
SRR8316897Juvenile bud stage 2.861
SRR8316894Third green stage 19.316
SRR8316900Third green stage 52.273
SRR8316901Third green stage 51.168
SRR8316898Complete white stage 20.212
SRR8316899Complete white stage 67.014
SRR8316903Complete white stage 34.255
SRR8316902Silver flowering stage17.843
SRR8316904Silver flowering stage26.442
SRR8316905Silver flowering stage10.831
SRR8316906Gold flowering stage 34.177
SRR8316907Gold flowering stage 34.181
SRR8316908Gold flowering stage 12.522
SRP132670SRR6706286Control65.914
SRR6706287Light intensity 50%65.554
SRR6706288Light intensity 20%66.625
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.013
CNS0095593Slightly white alabastrum(diploid) 236.721
CNS0095594Slightly white alabastrum(diploid) 339.214
CNS0095595Whole white alabastrum(diploid) 237.209
CNS0095596Whole white alabastrum(diploid) 333.301
CNS0095597Whole white alabastrum(diploid) 429.198
CNS0095598Silvery flower (diploied) 141.618
CNS0095599Silvery flower (diploied) 228.803
CNS0095600Silvery flower (diploied) 351.326
CNS0095601Golden flower (diploid) 132.977
CNS0095602Golden flower (diploid) 245.127
CNS0095603Golden flower (diploid) 344.424
CNS0095604Slightly white alabastrum(tetraploid) 138.264
CNS0095605Slightly white alabastrum(tetraploid) 230.207
CNS0095606Slightly white alabastrum(tetraploid) 365.062
CNS0095607Whole white alabastrum(tetraploid) 126.281
CNS0095608Whole white alabastrum(tetraploid) 218.471
CNS0095609Whole white alabastrum(tetraploid) 344.853
CNS0095610Silvery flower (tetraploid) 146.125
CNS0095611Silvery flower (tetraploid) 241.141
CNS0095612Silvery flower (tetraploid) 331.303
CNS0095613Golden flower (tetraploid) 124.446
CNS0095614Golden flower (tetraploid) 237.320
CNS0095615Golden flower (tetraploid) 326.887
CRA001975CRR073297Stem 147.528
CRR073298Stem 251.051
CRR073299Stem 350.893
CRR073300Leaf 157.072
CRR073301Leaf 253.469
CRR073302Leaf 351.910
CRR073303Juvenile bud 148.582
CRR073304Juvenile bud 250.558
CRR073305Juvenile bud 348.568
CRR073306Third green 123.703
CRR073307Third green 220.371
CRR073308Third green 322.934
CRR073309Second white 115.104
CRR073310Second white 220.205
CRR073311Second white 314.680
CRR073312Silver flowering 117.548
CRR073313Silver flowering 218.344
CRR073314Silver flowering 315.680
CRR073315Gold flowering 118.250
CRR073316Gold flowering 221.845
CRR073317Gold flowering 317.446
CRR073318Tawny withering 130.830
CRR073319Tawny withering 225.962
CRR073320Tawny withering 324.725