Gene detail

Detail information of GWHGAAZE032623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002453272.1	2.34658E-23	hypothetical protein SORBIDRAFT_04g002940 [Sorghum bicolor]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	4E-11	Protein NLP7
trEMBL	tr\|W5GTI0\|W5GTI0_WHEAT	7E-25	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_6BS_F2B8B4E55.1} (Fragment)
TAIR10	AT4G24020.1	2E-10	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000029	gene	59073	61517	+
GWHAAZE00000029	mRNA	59073	61517	+
GWHAAZE00000029	exon	59073	59228	+
GWHAAZE00000029	exon	59406	59847	+
GWHAAZE00000029	exon	60903	61342	+
GWHAAZE00000029	exon	61428	61517	+
GWHAAZE00000029	CDS	59073	59228	+
GWHAAZE00000029	CDS	59406	59847	+
GWHAAZE00000029	CDS	60903	61342	+
GWHAAZE00000029	CDS	61428	61517	+

Transcript Sequence
>GWHTAAZE032661 ATGTCCATTACCGGTGATATGTATGAGCGAAGATATCAGGAATTTGCAGAATGTATCAGAGATCTCTCCTTTCCTCTTCCTCTCAGTTCCCCTACAAGTCAGTTCTTCTACTTCGATGATTTTTCTTGCGAATCCAACCACTTGCCGGCTACTAAGGACACATTACCATCAGCAACAGCGCAAGTAGGTGAACAGCAGAATAATGATTTCGACTTGAGCCTTCAGTGTACCACAGCTACTGAACCTGCCACTGCCACCGTCGCTGCTGGAGCTGGTGCTGGTACTGATAGAACTCCATGTTGTACTAGTCCTAATGTAGCATTAGTGTTAGAGAAGATGGGGCTTGACCGGCCTGAACAACAACCAGGATTATCAATGGAATGTGATCCTGCTCTAAGTCTAAATAATGGAGTAGGAGGAGGAGATAATAATAATTTATCTGCTTCTGTTTCTGTTGCTTCTGCTAATGCGGACAAGCCCAACAAAACGAAAAAGGGAGGACCAGTAACTGGTGATACCTGTGGTATCTCAATTAGTTTAGAACAACTCGAACAACTTTTTGAGAAGCCTCGTGAAGAAGCTGCCAATATCCTTGGAGTTAGTGTTTCTACGTTGAAGCGGATCTCACGGGATCACAAGATCAAACGTTGGCCATTTCAGAAGAAAAATAACCGGGTTGTAAAGAAGGTATCTAGTTCTCCAAGAAATTGTACCTGTTCAAGTGGACTGGATCCTAAGAAATTAGTAGCTGTGGCAGCAACTGATGTTATTCAGACCTCACCACCACCTGCTGCAGAACTAGCAATGAAAGATGCGAGGCTTATTATCTTTAAGGCCAACTGTGAGAATTTTACCATAAGGTTTGAACTCCCTTCTACGTTGAAAATGGTAGATGTGGAGCAACAAGTGGCAAAAAGACTGGGTTTAAAGATGGGAAGCTTTAATATTAGTTATCTGGACGAATATAATGATTGGGTTTTAATAACCTGCGACGATGACTTGCGTAGATTACTGAGCTGGACAACAATCCGAATACAGGTCAGGGGTGTTCATGGTAGGCAGTTGCTTTTGTATTTTGTGCAATGTTGTATTCGTGAATTAACTCTTACTCTTTCTATCACAAATTGA

Network for GWHGAAZE032623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	178	222	2.60E-15
PF00564.25	PB1	284	340	6.50E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.294
	SRR3591711	White flower	0.248
	SRR3591712	Green floral bud	0.238
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	1.257
	SRR8316896	Juvenile bud stage	0.917
	SRR8316897	Juvenile bud stage	0.704
	SRR8316894	Third green stage	0.364
	SRR8316900	Third green stage	0.387
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.112
	SRR8316899	Complete white stage	1.724
	SRR8316903	Complete white stage	0.403
	SRR8316902	Silver flowering stage	0.320
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.054
	SRR8316906	Gold flowering stage	0.044
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.270
	SRR6706287	Light intensity 50%	0.394
	SRR6706288	Light intensity 20%	0.260
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.803
	CNS0095593	Slightly white alabastrum(diploid) 2	4.454
	CNS0095594	Slightly white alabastrum(diploid) 3	3.887
	CNS0095595	Whole white alabastrum(diploid) 2	2.685
	CNS0095596	Whole white alabastrum(diploid) 3	0.096
	CNS0095597	Whole white alabastrum(diploid) 4	2.119
	CNS0095598	Silvery flower (diploied) 1	3.829
	CNS0095599	Silvery flower (diploied) 2	5.366
	CNS0095600	Silvery flower (diploied) 3	0.950
	CNS0095601	Golden flower (diploid) 1	5.456
	CNS0095602	Golden flower (diploid) 2	2.853
	CNS0095603	Golden flower (diploid) 3	2.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.363
	CRR073298	Stem 2	1.148
	CRR073299	Stem 3	0.507
	CRR073300	Leaf 1	0.193
	CRR073301	Leaf 2	0.808
	CRR073302	Leaf 3	0.360
	CRR073303	Juvenile bud 1	0.264
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.366
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.346
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.329
	CRR073310	Second white 2	0.245
	CRR073311	Second white 3	0.161
	CRR073312	Silver flowering 1	0.116
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.635
	CRR073316	Gold flowering 2	2.125
	CRR073317	Gold flowering 3	0.321
	CRR073318	Tawny withering 1	0.577
	CRR073319	Tawny withering 2	1.597
	CRR073320	Tawny withering 3	0.597