Detail information of GWHGAAZE032624


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098049.11.19508E-86PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprottr|Q8GXC7|FBK50_ARATH1E-27F-box/kelch-repeat protein At3g06240
trEMBLtr|A0A022QS53|A0A022QS53_ERYGU2E-78Uncharacterized protein {ECO:0000313|EMBL:EYU30756.1}
TAIR10AT3G06240.11E-24F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000029gene7035774226-
GWHAAZE00000029mRNA7035774226-
GWHAAZE00000029exon7357874226-
GWHAAZE00000029exon7302473501-
GWHAAZE00000029exon7035770783-
GWHAAZE00000029CDS7357874226-
GWHAAZE00000029CDS7302473501-
GWHAAZE00000029CDS7035770783-
Transcript Sequence

Network for GWHGAAZE032624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5413.00E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.249
SRR3591706second leaf0.688
SRR3591707mature leaf0.638
SRR3591708Shoot apex1.179
SRR3591709Stem0.872
SRR3591710White floral bud0.869
SRR3591711White flower0.768
SRR3591712Green floral bud0.892
SRR3591713Yellow flower0.563
SRP173429 SRR8316895Juvenile bud stage 1.000
SRR8316896Juvenile bud stage 1.473
SRR8316897Juvenile bud stage 0.423
SRR8316894Third green stage 0.601
SRR8316900Third green stage 1.409
SRR8316901Third green stage 1.109
SRR8316898Complete white stage 0.233
SRR8316899Complete white stage 1.569
SRR8316903Complete white stage 0.427
SRR8316902Silver flowering stage0.312
SRR8316904Silver flowering stage0.748
SRR8316905Silver flowering stage0.239
SRR8316906Gold flowering stage 0.742
SRR8316907Gold flowering stage 0.275
SRR8316908Gold flowering stage 0.306
SRP132670SRR6706286Control0.496
SRR6706287Light intensity 50%0.439
SRR6706288Light intensity 20%0.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.665
CNS0095593Slightly white alabastrum(diploid) 20.941
CNS0095594Slightly white alabastrum(diploid) 31.073
CNS0095595Whole white alabastrum(diploid) 20.476
CNS0095596Whole white alabastrum(diploid) 30.872
CNS0095597Whole white alabastrum(diploid) 40.499
CNS0095598Silvery flower (diploied) 11.063
CNS0095599Silvery flower (diploied) 20.650
CNS0095600Silvery flower (diploied) 31.075
CNS0095601Golden flower (diploid) 10.722
CNS0095602Golden flower (diploid) 21.192
CNS0095603Golden flower (diploid) 31.171
CNS0095604Slightly white alabastrum(tetraploid) 10.692
CNS0095605Slightly white alabastrum(tetraploid) 20.378
CNS0095606Slightly white alabastrum(tetraploid) 31.681
CNS0095607Whole white alabastrum(tetraploid) 10.255
CNS0095608Whole white alabastrum(tetraploid) 20.391
CNS0095609Whole white alabastrum(tetraploid) 31.023
CNS0095610Silvery flower (tetraploid) 10.592
CNS0095611Silvery flower (tetraploid) 21.058
CNS0095612Silvery flower (tetraploid) 30.326
CNS0095613Golden flower (tetraploid) 10.180
CNS0095614Golden flower (tetraploid) 20.752
CNS0095615Golden flower (tetraploid) 30.227
CRA001975CRR073297Stem 11.387
CRR073298Stem 20.931
CRR073299Stem 30.457
CRR073300Leaf 11.048
CRR073301Leaf 20.796
CRR073302Leaf 30.321
CRR073303Juvenile bud 10.155
CRR073304Juvenile bud 20.292
CRR073305Juvenile bud 30.634
CRR073306Third green 10.058
CRR073307Third green 20.000
CRR073308Third green 30.253
CRR073309Second white 10.034
CRR073310Second white 20.109
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.194
CRR073314Silver flowering 30.053
CRR073315Gold flowering 10.542
CRR073316Gold flowering 21.085
CRR073317Gold flowering 30.398
CRR073318Tawny withering 10.560
CRR073319Tawny withering 20.428
CRR073320Tawny withering 30.649