Gene detail

Detail information of GWHGAAZE032727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047816.1	1.0296E-166	Phosphofructokinase 5 isoform 1 [Theobroma cacao]
COG	YP_003157071.1	5E-75	diphosphate--fructose-6-phosphate1-phosphotransferase
Swissprot	tr\|Q8VYN6\|PFKA5_ARATH	9E-161	ATP-dependent 6-phosphofructokinase 5, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03186} (Precursor)
trEMBL	tr\|A0A061DPT5\|A0A061DPT5_THECC	4E-167	Phosphofructokinase 5 isoform 1 {ECO:0000313\|EMBL:EOX91973.1}
TAIR10	AT2G22480.1	3E-132	phosphofructokinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	1841	11645	+
GWHAAZE00000040	mRNA	1841	11645	+
GWHAAZE00000040	exon	1841	2145	+
GWHAAZE00000040	exon	3272	3296	+
GWHAAZE00000040	exon	4309	4382	+
GWHAAZE00000040	exon	4708	4812	+
GWHAAZE00000040	exon	5846	5921	+
GWHAAZE00000040	exon	6347	6487	+
GWHAAZE00000040	exon	6854	6970	+
GWHAAZE00000040	exon	7049	7153	+
GWHAAZE00000040	exon	7891	7971	+
GWHAAZE00000040	exon	9140	9268	+
GWHAAZE00000040	exon	11508	11645	+
GWHAAZE00000040	CDS	1841	2145	+
GWHAAZE00000040	CDS	3272	3296	+
GWHAAZE00000040	CDS	4309	4382	+
GWHAAZE00000040	CDS	4708	4812	+
GWHAAZE00000040	CDS	5846	5921	+
GWHAAZE00000040	CDS	6347	6487	+
GWHAAZE00000040	CDS	6854	6970	+
GWHAAZE00000040	CDS	7049	7153	+
GWHAAZE00000040	CDS	7891	7971	+
GWHAAZE00000040	CDS	9140	9268	+
GWHAAZE00000040	CDS	11508	11645	+

Transcript Sequence
>GWHTAAZE032765 ATGGAGGCAATCTCGCCGGCGATCGGCTCCAAGCTGTTTGCTCCGGCGAATACCTACGATCGCTCCAGTTTGTTTTCAGGTGCATCAGGTTTTTCTACTTTGAGACTGAACAGAAGCAAATTGAAAGGAATTTGCAAGAAGAGCCGTGTTTATTCTGAGAGCAAGAGTTCGAATATTGATTTCAGTGATCCTGACTGGAAGTCCAAGTATGAGGAGGATTTCGAGAGCCGATTCAATATTCCTCACCTAACTGATGTGTTCGATGATGTTGTTTCTTATCCTTCTACTTTTTGTCTCAAGATGAGGACTCCTGTAAGTGAAGATTTCGAGGTCATCCGGTTTTCCTCCCCTACATCTGCTGGTGCTGAGTGCATTGATCCTGATTGTACATGGGTGGAGCAGTGGGTCCACCGTGCTGGTCCTCGAGCTAATATACTTCAAACCAGAAGATGTAAAAGCAGCAATTATAACATGGACTTTGCCCTGGTCTTAATGATGTCATCAGACAGGAAAGAGGAATCAACATGCTTTTTCGTGCTTGGTGGAAATGGCACGCATGCTGGTGCCAATGCAATCCACAACGAGTGCCTTAAAAGAAAGTTAAAGGTGGCTGTAGTTGGTGTGCCAAAAACTATTGATAATGATATTCTGCTGATGGACAAAACTTTTGGTTTTGATACTGCCGTTGAAGAAGCACAAAGAGCAATAAATTCTGCGTATATTGAGGCACATAGTGCTTATCGTGGTATTGGGATTGTGAAATTGATGGGTCGTAGCAGTGGATTTATCGCAATGCAAGCATCTCTTGCTAGTGGGCAAGTTGATATATGTTTGATCCCAGAGGTACCTTTTAATTTACATGGACCTCATGGCGTCCTGAGGCATCTGAAGTATTTACTTGAGACAAAAGGATCAGCTGTAGTCTGTGTAGCAGAGGGAGCTGGACAGAATTTTGTTGAGAAAACTAATGCCAAGGATGCATCAGGAAACATCGTGCTAGGAGATATTGGTGTACACATACAACAAGAGACTAAAAAATACTTCAAGGAGATTGGAGATCCTGCTGATGTGAAATACATTGATCCTACATACATGATCCGTGCATGCCGGGCAAATGCTTCAGATGGCATTTTATGCACTGTTCTGGGTCAAAATGCCGTTCATGGAGCATTTGCCGGATACAGTGGCATCACAGTGGGCATATGCAACACTCACTATGTCTACCTTCCAATCCCTGAAGTCATCTCGTATCCCAGGGTTGTGGACCCCAACAGTCGATGTGGCACCGGTGCTTGA

Network for GWHGAAZE032727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00365.21	PFK	132	388	3.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00850	pfkA, PFK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Galactose metabolism	map00052
		Methane metabolism	map00680
		RNA degradation	map03018
		HIF-1 signaling pathway	map04066
		AMPK signaling pathway	map04152
		Glucagon signaling pathway	map04922
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0006002	biological_process	fructose 6-phosphate metabolic process
GO:0003872	molecular_function	6-phosphofructokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.395
	SRR3591706	second leaf	1.413
	SRR3591707	mature leaf	1.103
	SRR3591708	Shoot apex	4.006
	SRR3591709	Stem	3.902
	SRR3591710	White floral bud	5.231
	SRR3591711	White flower	7.604
	SRR3591712	Green floral bud	3.855
	SRR3591713	Yellow flower	6.580
SRP173429	SRR8316895	Juvenile bud stage	2.140
	SRR8316896	Juvenile bud stage	1.759
	SRR8316897	Juvenile bud stage	1.907
	SRR8316894	Third green stage	1.200
	SRR8316900	Third green stage	3.659
	SRR8316901	Third green stage	3.357
	SRR8316898	Complete white stage	1.621
	SRR8316899	Complete white stage	4.827
	SRR8316903	Complete white stage	2.438
	SRR8316902	Silver flowering stage	1.777
	SRR8316904	Silver flowering stage	2.918
	SRR8316905	Silver flowering stage	1.044
	SRR8316906	Gold flowering stage	4.932
	SRR8316907	Gold flowering stage	4.268
	SRR8316908	Gold flowering stage	10.288
SRP132670	SRR6706286	Control	1.607
	SRR6706287	Light intensity 50%	1.617
	SRR6706288	Light intensity 20%	1.944
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.869
	CNS0095593	Slightly white alabastrum(diploid) 2	2.579
	CNS0095594	Slightly white alabastrum(diploid) 3	1.137
	CNS0095595	Whole white alabastrum(diploid) 2	1.405
	CNS0095596	Whole white alabastrum(diploid) 3	0.516
	CNS0095597	Whole white alabastrum(diploid) 4	1.922
	CNS0095598	Silvery flower (diploied) 1	1.484
	CNS0095599	Silvery flower (diploied) 2	1.531
	CNS0095600	Silvery flower (diploied) 3	3.006
	CNS0095601	Golden flower (diploid) 1	1.645
	CNS0095602	Golden flower (diploid) 2	1.644
	CNS0095603	Golden flower (diploid) 3	1.856
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.878
	CNS0095610	Silvery flower (tetraploid) 1	3.172
	CNS0095611	Silvery flower (tetraploid) 2	2.655
	CNS0095612	Silvery flower (tetraploid) 3	3.701
	CNS0095613	Golden flower (tetraploid) 1	1.198
	CNS0095614	Golden flower (tetraploid) 2	1.156
	CNS0095615	Golden flower (tetraploid) 3	0.838
CRA001975	CRR073297	Stem 1	2.440
	CRR073298	Stem 2	2.340
	CRR073299	Stem 3	2.671
	CRR073300	Leaf 1	2.718
	CRR073301	Leaf 2	1.614
	CRR073302	Leaf 3	2.563
	CRR073303	Juvenile bud 1	2.232
	CRR073304	Juvenile bud 2	4.059
	CRR073305	Juvenile bud 3	5.091
	CRR073306	Third green 1	2.384
	CRR073307	Third green 2	1.931
	CRR073308	Third green 3	2.477
	CRR073309	Second white 1	5.757
	CRR073310	Second white 2	5.487
	CRR073311	Second white 3	4.257
	CRR073312	Silver flowering 1	4.250
	CRR073313	Silver flowering 2	5.025
	CRR073314	Silver flowering 3	4.026
	CRR073315	Gold flowering 1	2.248
	CRR073316	Gold flowering 2	1.381
	CRR073317	Gold flowering 3	0.746
	CRR073318	Tawny withering 1	4.503
	CRR073319	Tawny withering 2	4.611
	CRR073320	Tawny withering 3	2.010