Detail information of GWHGAAZE032729


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAD12175.13.15279E-8314-3-3 d-2-AS protein [Nicotiana tabacum]
Swissprottr|O49996|1433D_TOBAC8E-8514-3-3-like protein D
trEMBLtr|Q75ZE1|Q75ZE1_TOBAC1E-8314-3-3 d-2-AS protein {ECO:0000313|EMBL:BAD12175.1}
TAIR10AT5G65430.13E-66general regulatory factor 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000040gene3221034740-
GWHAAZE00000040mRNA3221034740-
GWHAAZE00000040exon3221032335-
GWHAAZE00000040exon3285832980-
GWHAAZE00000040exon3423134740-
GWHAAZE00000040CDS3423134740-
GWHAAZE00000040CDS3285832980-
GWHAAZE00000040CDS3221032335-
Transcript Sequence

Network for GWHGAAZE032729

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00244.212014/3/3202442.40E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06630YWHAE MAPK signaling pathway - yeast map04011
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
PI3K-Akt signaling pathwaymap04151
Cell cyclemap04110
Oocyte meiosismap04114
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722

Gene Ontology

GO term OntologyName
GO:0019904molecular_functionprotein domain specific binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.124
SRR3591706second leaf0.050
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.547
SRR3591709Stem0.424
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.665
SRR8316896Juvenile bud stage 1.704
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.094
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.133
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.055
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.092
SRR6706288Light intensity 20%0.035
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.440
CNS0095593Slightly white alabastrum(diploid) 20.205
CNS0095594Slightly white alabastrum(diploid) 31.637
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.067
CNS0095598Silvery flower (diploied) 10.167
CNS0095599Silvery flower (diploied) 20.112
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.411
CNS0095605Slightly white alabastrum(tetraploid) 20.286
CNS0095606Slightly white alabastrum(tetraploid) 30.317
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.144
CNS0095609Whole white alabastrum(tetraploid) 30.237
CNS0095610Silvery flower (tetraploid) 10.225
CNS0095611Silvery flower (tetraploid) 21.253
CNS0095612Silvery flower (tetraploid) 32.267
CNS0095613Golden flower (tetraploid) 10.470
CNS0095614Golden flower (tetraploid) 20.545
CNS0095615Golden flower (tetraploid) 30.987
CRA001975CRR073297Stem 11.156
CRR073298Stem 20.538
CRR073299Stem 30.408
CRR073300Leaf 10.000
CRR073301Leaf 20.063
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.144