Gene detail

Detail information of GWHGAAZE032751

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18620.1	0	unnamed protein product [Coffea canephora]
COG	YP_004775215.1	5E-73	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A068VCR3\|A0A068VCR3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_259 {ECO:0000313\|EMBL:CDP18620.1}
TAIR10	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	467924	471565	-
GWHAAZE00000040	mRNA	467924	471565	-
GWHAAZE00000040	exon	467924	471565	-
GWHAAZE00000040	CDS	467924	471565	-

Transcript Sequence
>GWHTAAZE032789 ATGTTCCTTTCACCAAATGTTGCTTCTTCTTCCTTATCTACCAATGAGGGAATGGCTCTCCTTCAATGGAAAAATTGCCTTTTAAGCCTAAACAAGTCCATACAAACTTCATGGACTCTTCCTTCTAATAACGCCACCAATTCTTCTCCCCATTCCCAAAAAAACCTAAGCCACTGCTCTTGGCTCGGCGTTTCATGCATTGAAGGAAGCGTAATCCGATTAAACCTTTCGATGACAGGTTTAAAAGGTACGCTGTACAACTTTTCTTTCTCATCCTTCCCAAATCTTACCTACTTTGAACTTAGCCTTAATCAACTCAGCGGTAGCATCCCCCGACAGATTAGTACTCTATCAAAGCTCAAGTATCTCGATTTTTCGCAAAATCTTTTTTCGGGTATCATACCCCCGGAGATTGGGTTTTTAACGAATCTTGAGATTCTTCATTTGTATGAAAATCAACTCACTGGCTCGATTCCTCTAGAGATAGGCCAGCTAAAGTCTCTCTATGAGCTCTGGTTGTCCACAAACTCCCTTGAAGGTCCAATTCCTTCTTCAATCGGCAATTTGAGCAACTTAGCTTTGCTCTATCTCTACCAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAGAACCTTTCTTTATATGAAAATCAATTCACTGGCTCTATTCCTCTAGAGATAGGCCAATTAAAGTATCTCTATTTGCTCCATTTGTCCATAAACTCCCTTGAAGGACCAATTCCTTATTCTATCGGCAATTTGAGCAACTTAGCTTTGCTCTATCTCTACCAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAGAACCTTTCTTTATATGAAAATCAACTCACTGGCTCGATTCCTCTAGAGATTGGCCAATTAAAGTATCTCTATTTGCTCGTGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTATCGGCAATTTGAGCAATTTAGCTACGCTCTATCTCTACAAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAGAATCTTTCTTTATATGAAAATCAACTCACTGGCTCGATTCCTCCAGAGATAGGCCAATTAAAGCATCTCAATTTGCTCTCGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTATTGGCAATTTGAGCAACTTAGCTTTGCTCTATCTCTATGAGAATAAACTTTCAAGCTCTATTCCTCAAGAGATAGGCCAACTAAAGTCTCTCTACAATCTCCAACTATCCAAAAACTCTCTTGAAGGACCAATTCCTTCTTCAATCGGCAATTTGAGCAACTTAGCTTTTCTCTATCTCAACAAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACGAAGCTGCAGAACCTTTCTTTATATGAAAATCAACTCACTGGCACGATTCCTCCAGATATGGGCCAATTAAAATATCTCAATGGGCTCTCGTTGGACTCAAACTTCCTTGAAGGACCAATTCCTTCTTCTATCAGCAATTTGAGCAACTTAAATATTCTCACTATAAGCAACAACCAACTAATTGGTGAAGTAACCAAAAGCTTTAGAAACTTCACGAGTTTAGTTAGACTTCGCCTCGACAATAACAAGCTCATCGGAAATTTATCTGAAGTTTTTGGCGTTTATCCGAAATTAAAATTCATGAATATTAGTGATAATGAATTTTATGGGGAGATTTCGGATAATTGGAGTCGTTGCAAACAGTTGACAAATTTGCATATCGCAAAGAACAATCTAAGAAGCAGTATACCAGCGGCATTTGGAAATTCTGTCCAACTACGTGAACTTGATCTTTCTTCAAATCATTTAGTTGGGAATATTCCTAAGGAATTTGGGAAATTGAAGTATTTACTAAAGTTGGTTTTGAGTGATAACAAACTTTCTGGCTCTGTGCCTCAAGAACTCGTTTCATTGAGCGAGTTGTTGTATCTTGATCTGTCGGCGAATAAATTGAGTGGGAATATTCAAGGAGTTCTTGGGGACTACTTGCATCTGTTCTATTTGAACTTAAGCAATAATCAATTTGGTGGGGAAATACCAATTCAGATTATAAAGCTAGTCCAACTTTCGGAGCTCGATTTAAGTCATAACTCATTCTCGGGCGAAATTCCGTCTCAGTTAGAAAGTTTGGAGAATTTGGTGTCTATTAACATATCATATAATAAGTTGCAGGGTCCCATACCGAACAATAAAGCTTTTATGAGTGCTTCCATATATGAATTACAAGGAAATCGAGGTTTGTGTGGAAATGTTACAGGATTACAGCTCTGTCAAAATCCTTCAATGGGGTCTCAGCATAACGTGAATAAGAGCCGAAAACTAGCCTTTATAATCGGTCTCCCTATTTTGGGATCAATTTTACTTCTCGGTGCATTCATTGGTGTGTTGATGGCTTATGAAAGAATAAAAAGAAAAAAGGAAGCCGAAAACGAGAAAAAAAGGGTTGCCAAAGACATTAGTAAAGAACATAAAAATATGTTTTTCGCATTAACGTTTGATGGAAAAGAAACTTATGATGAAATCATAACAGCCATAGAAGATTTTGACACTCGATATTGCATTGGAAGAGGAAGATTCGGAAGTGTTTACAAAGCTCTACTCCCCTCGGGTAGTATTGTAGCTGTGAAGAAGCTTCATTCGATATCGGATATGGTTGACCGACAAGGCTTTTTAAATGAGGTGAGAGCTTTGACCGAGATAAAGCACCGTAATATTGTGAAGCTTTATGGATTTTGTTCACATGCTCGACATGAGTTTTTGGTATATGAGTACCTCGAAAGAGGTAGCTTGGCATCAATATTAAGCAATGAAGAAGATGCAAAGGAGCTGGATTGGACTAAGAGGGTAGATCTCATTAAGGGGGTCGCTTATGCTTTGTCTTACATGCACCATGATTGTGCCACGCCAATTGTTCATCGAGATGTGTCAAGCAAGAATATACTGCTTGATTATGCATACAATGCTAGTGTTTCGGATTTCGGCACTGCCAAGTTTCTAAATCCAGATTCATCCAATTGGACAGCATTTGCAGGCACATATGGATATATTGCCCCAGGTACATTAAAGACCCGTTTGGTTTGGCCAGGTGAAATAATTTTTCACCTGGGTGAGCGATACTTGTTTGGGATTAAACTTTTTTCACTATCTTTCTAAGACTTTGTTTAGAAATATAAATTATAATATCTTCATTTATTCATAATTGTATTTTTATTTATGTTGGCAGAGTTCGCTTACACGATGAAGGTAACTGAAAAGTGCGACGTGTATAGTTTTGGTGTGCTAGCACTAGAAGTGATCAAAGGGAACCATCCCGGTGACTTAATCGACACTCTTTTATGTTCATCTACCGAGGAGATACAACTGAAAGACATGGTCGACCAACGCATTCCATTACCCTCACCTGGAGTTGAGGAGGTTGTGGCATCTATCGTAAAAATAGCGAGAACCTGTTTAAATGCCAATCCAAAATCCAGGCCAACGATGCTTGTTGTTTCTCAGTTGTTATCAACTCGAACAATAAACTTATCTGAGATTCATGTTGATGAATAA

Network for GWHGAAZE032751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	574	634	7.80E-07
PF00069.26	Pkinase	884	1053	8.80E-34
PF07714.18	PK_Tyr_Ser-Thr	1099	1193	2.90E-07

Protein Sequence

>GWHPAAZE032771
MFLSPNVASSSLSTNEGMALLQWKNCLLSLNKSIQTSWTLPSNNATNSSPHSQKNLSHCSWLGVSCIEGSVIRLNLSMTGLKGTLYNFSFSSFPNLTYFELSLNQLSGSIPRQISTLSKLKYLDFSQNLFSGIIPPEIGFLTNLEILHLYENQLTGSIPLEIGQLKSLYELWLSTNSLEGPIPSSIGNLSNLALLYLYQNKLSGIIPPEIGLLTKLKNLSLYENQFTGSIPLEIGQLKYLYLLHLSINSLEGPIPYSIGNLSNLALLYLYQNKLSGIIPPEIGLLTKLKNLSLYENQLTGSIPLEIGQLKYLYLLVLSTNSLEGPIPSSIGNLSNLATLYLYKNKLSGIIPPEIGLLTKLKNLSLYENQLTGSIPPEIGQLKHLNLLSLSTNSLEGPIPSSIGNLSNLALLYLYENKLSSSIPQEIGQLKSLYNLQLSKNSLEGPIPSSIGNLSNLAFLYLNKNKLSGIIPPEIGLLTKLQNLSLYENQLTGTIPPDMGQLKYLNGLSLDSNFLEGPIPSSISNLSNLNILTISNNQLIGEVTKSFRNFTSLVRLRLDNNKLIGNLSEVFGVYPKLKFMNISDNEFYGEISDNWSRCKQLTNLHIAKNNLRSSIPAAFGNSVQLRELDLSSNHLVGNIPKEFGKLKYLLKLVLSDNKLSGSVPQELVSLSELLYLDLSANKLSGNIQGVLGDYLHLFYLNLSNNQFGGEIPIQIIKLVQLSELDLSHNSFSGEIPSQLESLENLVSINISYNKLQGPIPNNKAFMSASIYELQGNRGLCGNVTGLQLCQNPSMGSQHNVNKSRKLAFIIGLPILGSILLLGAFIGVLMAYERIKRKKEAENEKKRVAKDISKEHKNMFFALTFDGKETYDEIITAIEDFDTRYCIGRGRFGSVYKALLPSGSIVAVKKLHSISDMVDRQGFLNEVRALTEIKHRNIVKLYGFCSHARHEFLVYEYLERGSLASILSNEEDAKELDWTKRVDLIKGVAYALSYMHHDCATPIVHRDVSSKNILLDYAYNASVSDFGTAKFLNPDSSNWTAFAGTYGYIAPGTLKTRLVWPGEIIFHLGERYLFGIKLFSLSFDFVKYKLYLHLFIIVFLFMLAEFAYTMKVTEKCDVYSFGVLALEVIKGNHPGDLIDTLLCSSTEEIQLKDMVDQRIPLPSPGVEEVVASIVKIARTCLNANPKSRPTMLVVSQLLSTRTINLSEIHVDE

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.025
	SRR3591706	second leaf	0.113
	SRR3591707	mature leaf	0.987
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.090
	SRR3591710	White floral bud	0.835
	SRR3591711	White flower	2.229
	SRR3591712	Green floral bud	1.651
	SRR3591713	Yellow flower	0.772
SRP173429	SRR8316895	Juvenile bud stage	0.382
	SRR8316896	Juvenile bud stage	0.267
	SRR8316897	Juvenile bud stage	0.203
	SRR8316894	Third green stage	0.109
	SRR8316900	Third green stage	0.267
	SRR8316901	Third green stage	0.404
	SRR8316898	Complete white stage	0.107
	SRR8316899	Complete white stage	0.558
	SRR8316903	Complete white stage	0.103
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.049
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.055
	SRR8316907	Gold flowering stage	0.034
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	0.328
	SRR6706287	Light intensity 50%	0.150
	SRR6706288	Light intensity 20%	0.172
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.844
	CNS0095593	Slightly white alabastrum(diploid) 2	0.391
	CNS0095594	Slightly white alabastrum(diploid) 3	0.281
	CNS0095595	Whole white alabastrum(diploid) 2	0.092
	CNS0095596	Whole white alabastrum(diploid) 3	0.125
	CNS0095597	Whole white alabastrum(diploid) 4	0.146
	CNS0095598	Silvery flower (diploied) 1	0.431
	CNS0095599	Silvery flower (diploied) 2	0.445
	CNS0095600	Silvery flower (diploied) 3	0.338
	CNS0095601	Golden flower (diploid) 1	0.733
	CNS0095602	Golden flower (diploid) 2	0.546
	CNS0095603	Golden flower (diploid) 3	0.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.207
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.203
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.074
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.621
	CNS0095610	Silvery flower (tetraploid) 1	0.196
	CNS0095611	Silvery flower (tetraploid) 2	0.302
	CNS0095612	Silvery flower (tetraploid) 3	0.153
	CNS0095613	Golden flower (tetraploid) 1	0.174
	CNS0095614	Golden flower (tetraploid) 2	0.200
	CNS0095615	Golden flower (tetraploid) 3	0.129
CRA001975	CRR073297	Stem 1	0.473
	CRR073298	Stem 2	0.407
	CRR073299	Stem 3	0.321
	CRR073300	Leaf 1	0.286
	CRR073301	Leaf 2	0.253
	CRR073302	Leaf 3	0.169
	CRR073303	Juvenile bud 1	0.136
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.179
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.058
	CRR073309	Second white 1	0.003
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	6.559
	CRR073316	Gold flowering 2	13.655
	CRR073317	Gold flowering 3	7.705
	CRR073318	Tawny withering 1	1.720
	CRR073319	Tawny withering 2	2.213
	CRR073320	Tawny withering 3	0.934