Detail information of GWHGAAZE032772


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAW57305.11.02336E-39alpha-tubulin, partial [Ceratopteris richardii]
Swissprottr|P33629|TBA_PRUDU2E-40Tubulin alpha chain
trEMBLtr|M0TII3|M0TII3_MUSAM2E-40Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P17960_001}
TAIR10AT4G14960.25E-34Tubulin/FtsZ family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000040gene11794431179865-
GWHAAZE00000040mRNA11794431179865-
GWHAAZE00000040exon11794431179865-
GWHAAZE00000040CDS11794431179865-
Transcript Sequence

Network for GWHGAAZE032772

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03953.18Tubulin_C371154.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.848
SRR3591706second leaf1.485
SRR3591707mature leaf0.658
SRR3591708Shoot apex2.932
SRR3591709Stem4.846
SRR3591710White floral bud5.221
SRR3591711White flower0.686
SRR3591712Green floral bud10.157
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.974
SRR8316896Juvenile bud stage 1.534
SRR8316897Juvenile bud stage 0.910
SRR8316894Third green stage 1.022
SRR8316900Third green stage 2.568
SRR8316901Third green stage 2.677
SRR8316898Complete white stage 1.234
SRR8316899Complete white stage 4.279
SRR8316903Complete white stage 0.458
SRR8316902Silver flowering stage0.127
SRR8316904Silver flowering stage0.284
SRR8316905Silver flowering stage0.196
SRR8316906Gold flowering stage 0.263
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.368
SRP132670SRR6706286Control1.673
SRR6706287Light intensity 50%1.428
SRR6706288Light intensity 20%1.449
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.169
CNS0095593Slightly white alabastrum(diploid) 23.523
CNS0095594Slightly white alabastrum(diploid) 32.848
CNS0095595Whole white alabastrum(diploid) 20.896
CNS0095596Whole white alabastrum(diploid) 32.556
CNS0095597Whole white alabastrum(diploid) 40.753
CNS0095598Silvery flower (diploied) 11.860
CNS0095599Silvery flower (diploied) 20.544
CNS0095600Silvery flower (diploied) 30.936
CNS0095601Golden flower (diploid) 11.418
CNS0095602Golden flower (diploid) 21.738
CNS0095603Golden flower (diploid) 30.830
CNS0095604Slightly white alabastrum(tetraploid) 13.429
CNS0095605Slightly white alabastrum(tetraploid) 22.616
CNS0095606Slightly white alabastrum(tetraploid) 33.730
CNS0095607Whole white alabastrum(tetraploid) 11.126
CNS0095608Whole white alabastrum(tetraploid) 21.427
CNS0095609Whole white alabastrum(tetraploid) 33.152
CNS0095610Silvery flower (tetraploid) 11.116
CNS0095611Silvery flower (tetraploid) 20.758
CNS0095612Silvery flower (tetraploid) 30.517
CNS0095613Golden flower (tetraploid) 10.433
CNS0095614Golden flower (tetraploid) 21.742
CNS0095615Golden flower (tetraploid) 30.974
CRA001975CRR073297Stem 15.525
CRR073298Stem 24.697
CRR073299Stem 34.023
CRR073300Leaf 17.709
CRR073301Leaf 24.777
CRR073302Leaf 35.094
CRR073303Juvenile bud 16.158
CRR073304Juvenile bud 24.970
CRR073305Juvenile bud 33.532
CRR073306Third green 11.434
CRR073307Third green 22.240
CRR073308Third green 30.963
CRR073309Second white 10.900
CRR073310Second white 20.677
CRR073311Second white 30.000
CRR073312Silver flowering 10.411
CRR073313Silver flowering 20.504
CRR073314Silver flowering 30.435
CRR073315Gold flowering 11.290
CRR073316Gold flowering 20.742
CRR073317Gold flowering 30.604
CRR073318Tawny withering 12.457
CRR073319Tawny withering 22.026
CRR073320Tawny withering 32.133