Detail information of GWHGAAZE032786


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352955.12.19199E-58PREDICTED: F-box protein At3g07870-like [Solanum tuberosum]
Swissprottr|Q9SU30|CPR30_ARATH3E-25F-box protein CPR30
trEMBLtr|M1BWG5|M1BWG5_SOLTU8E-59Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054509}
TAIR10AT3G06240.13E-23F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000044gene113615114847+
GWHAAZE00000044mRNA113615114847+
GWHAAZE00000044exon113615114847+
GWHAAZE00000044CDS113615114847+
Transcript Sequence

Network for GWHGAAZE032786

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box39758.70E-07
PF07734.14FBA_12443432.00E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.066
SRR3591711White flower0.000
SRR3591712Green floral bud0.500
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.323
SRR8316896Juvenile bud stage 0.430
SRR8316897Juvenile bud stage 0.258
SRR8316894Third green stage 0.386
SRR8316900Third green stage 0.860
SRR8316901Third green stage 0.666
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.084
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.219
SRR6706287Light intensity 50%0.166
SRR6706288Light intensity 20%0.198
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.036
CNS0095593Slightly white alabastrum(diploid) 20.817
CNS0095594Slightly white alabastrum(diploid) 31.029
CNS0095595Whole white alabastrum(diploid) 21.096
CNS0095596Whole white alabastrum(diploid) 31.072
CNS0095597Whole white alabastrum(diploid) 41.206
CNS0095598Silvery flower (diploied) 10.063
CNS0095599Silvery flower (diploied) 20.564
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.038
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.060
CNS0095604Slightly white alabastrum(tetraploid) 10.735
CNS0095605Slightly white alabastrum(tetraploid) 20.525
CNS0095606Slightly white alabastrum(tetraploid) 30.642
CNS0095607Whole white alabastrum(tetraploid) 11.106
CNS0095608Whole white alabastrum(tetraploid) 21.209
CNS0095609Whole white alabastrum(tetraploid) 30.698
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.125
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.039
CNS0095615Golden flower (tetraploid) 30.012
CRA001975CRR073297Stem 10.205
CRR073298Stem 20.073
CRR073299Stem 30.049
CRR073300Leaf 10.056
CRR073301Leaf 20.557
CRR073302Leaf 30.040
CRR073303Juvenile bud 10.105
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.162
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.212
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.153
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.111