Gene detail

Detail information of GWHGAAZE032792

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006373375.1	0	hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
Swissprot	tr\|Q9FID8\|Y5900_ARATH	2E-164	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|U5FP93\|U5FP93_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51172.1} (Fragment)
TAIR10	AT3G51550.1	9E-136	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000045	gene	21212	23809	-
GWHAAZE00000045	mRNA	21212	23809	-
GWHAAZE00000045	exon	21212	21693	-
GWHAAZE00000045	exon	22042	23809	-
GWHAAZE00000045	CDS	22042	23809	-
GWHAAZE00000045	CDS	21212	21693	-

Transcript Sequence
>GWHTAAZE032830 ATGTTCGCCTTCATTCTCTTCCTCTCCTCCTTCCTCTACCTCACGACCGCCGCATTATACACCCCTACAGATTATGTCCTCCTCAACTGCGGCAGTGACACCACCACCTCATCAATTGATGGCCGAAGCTGGGACGGTGACACCCGCTCCAAATTCTCTCCTCCCGATGCAGAATCCATTTCAACATCTTCCGCAGCCTCGGGCCAAACCAACTCCATCACTCAAGTCCCCTACATGACTGCCCGCATAATTCAAAACTCTTCCTTCACCTACACCTTCCCTCTCTCCCCGGGCCCCAAATTCCTCCGCCTCTACTTCTACCCCGCCACCTATAACACCCTTGAAAAATCCACTTCCTTCTTCACCGTAACCGCCAACGACTACACTCTCCTCAAAAACTTTAGTGCTTTTCTCACCGTCACCCATTTAAAAAATCAAGACTCAATTATCAAAGAGTTCCTAGTCCAAGTTACTGAACACAAGTCACTCAACCTAACCTTTTCTCCCTCGCCCAACTCATATGCCTTCATTAATGGAATCGAAATCGTCTCCATTCCGGATAAGTACTATATCCACGGATTAGATAAAGGCATTCCAAACGTAGGACAGATGACCCCTTATTATATTGATACCACCACTGCCCTCGAATCTCTGTACCGGTTCAACGTCGGCGGGAACGACATCCCGGGTACTAACGACACCGGAATGTTCCGTTCATGGGTAAAAGACGACGACTCTTTATTAGGCGGAACCTTAGGGTTTGCAGTTCACCTAGATATTCCAATCACGTACACGTCTGCCACACCCAATTACAGTGCACCCAAGATGGTTTACACTACGGCCAGAACCATGAACAACAACAGTTTATGGTACAACATGACGTGGACATTCCCCGTTGATGCTGGTTTTTATTACCTGCTTCGACTCTACTTTTGTGAGTTTCAAAGGGAAATTACGGATGGCAATCAACGGGTGTTCACCATAGATATCAATAATCGGACGGCGGAGAAGGAAGCTGATGTCATCAAGTGGAGTAACGGCAACGGAATTCCTGTGTACAAAGACTACGTAGTGAGGGTCAACGATGACTCAAATAATGGCCGTGGTAGAGGAGATTTGTGGCTTTCTATGCACCCCAATATGAAGACCCTCTCTCAGTATGCCAATGCTATTTTAAACGGGTTGGAGATCTTCAAATTGAACCGATCCGACGGTAGCCTTGCCGGTCCCAATCCTGAATTAATCACCACTCCTACATCACCGTCAACGAACTTTCCAGCGACAAATAAACCGCAAAGCAAATCAACCATCTTCGCTGTCATCGGCGGTGTTCTCGGCGGCATCATCGTGGTCTCAATTCTAGGGTTTCTAATTTTCAGGCACCGGCAAACGGAGAAACACTACGTCAAGTCATCGTTGGATCCAATTTCGTACACGTCAAAGTCCACGAAGAATAGTGCTTCATCGCTACCGTCGGGTTTATGCCGGCGATTTTCACTTGCAGAGATAAAATCGGCCACTGGAAACTTTGACGATAACTTTGTGATTGGTACAGGGGGATTTGGTAACGTGTATAAGGGGTACATAGACAATGGTGCGACTGCAGTTGCGATCAAGCGACTGAACGCCGCGTCAAATCAAGGGATCCGCGAATTCGAAACGGAAATCGAATTACTATCGCAGCTACGTCACCTCCATTTGGTATCTCTAATTGGTTACTGTGATGATAATGGAGAGATGGTATTGGTTTATGATTACATGGCAAATGTGTTGTGCGCTAGGCCTGCGATTATTCCCGGGTTGCCTAAGGAACAAGTAAACTTGGCTGAGTGGGCCCGATTGTCTTATCGAAAAGGGAAGCTTGAGAAGATTATTGATCCTCGTCTAAGGAGTGAGATTGCACCCGAGTGCTTAACCAAGTTCGGTGAGGTAGCTTATAGTTGCTTGAGAGATCAAGGGATCGAACGACCTGGAATGAATGATATAGTTTGGAACCTTGAATTTGTGTTACAACTTCAAGAGTCAGCAGATAAGCTGGAACAAATTAAAGATGTAAGTGAAGCGAGCATCGGTTCCTATGCTCAAACTAGTTTGCATGGAACTGCATCCACAACCGATGATGACATGTTTTCTGAATCAACTGAAGGGATGTCCAAGTTTGAGAGTAATGACTCACTGTCAACTCCCAATCAATATGACTCCAAGTCTCAATCTGTTTTCTCGGAGATTATAAATCCAACAGGAAGATAA

Network for GWHGAAZE032792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	28	399	1.40E-42
PF07714.18	PK_Tyr_Ser-Thr	515	589	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.647
	SRR3591706	second leaf	3.673
	SRR3591707	mature leaf	9.340
	SRR3591708	Shoot apex	2.545
	SRR3591709	Stem	15.163
	SRR3591710	White floral bud	1.674
	SRR3591711	White flower	3.143
	SRR3591712	Green floral bud	2.257
	SRR3591713	Yellow flower	1.241
SRP173429	SRR8316895	Juvenile bud stage	7.047
	SRR8316896	Juvenile bud stage	6.321
	SRR8316897	Juvenile bud stage	5.672
	SRR8316894	Third green stage	2.678
	SRR8316900	Third green stage	4.161
	SRR8316901	Third green stage	4.567
	SRR8316898	Complete white stage	1.073
	SRR8316899	Complete white stage	10.907
	SRR8316903	Complete white stage	2.473
	SRR8316902	Silver flowering stage	0.708
	SRR8316904	Silver flowering stage	0.904
	SRR8316905	Silver flowering stage	0.740
	SRR8316906	Gold flowering stage	2.702
	SRR8316907	Gold flowering stage	1.323
	SRR8316908	Gold flowering stage	3.675
SRP132670	SRR6706286	Control	11.460
	SRR6706287	Light intensity 50%	7.508
	SRR6706288	Light intensity 20%	7.068
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.603
	CNS0095593	Slightly white alabastrum(diploid) 2	5.924
	CNS0095594	Slightly white alabastrum(diploid) 3	5.891
	CNS0095595	Whole white alabastrum(diploid) 2	4.329
	CNS0095596	Whole white alabastrum(diploid) 3	2.241
	CNS0095597	Whole white alabastrum(diploid) 4	4.335
	CNS0095598	Silvery flower (diploied) 1	14.839
	CNS0095599	Silvery flower (diploied) 2	10.435
	CNS0095600	Silvery flower (diploied) 3	5.589
	CNS0095601	Golden flower (diploid) 1	8.619
	CNS0095602	Golden flower (diploid) 2	10.507
	CNS0095603	Golden flower (diploid) 3	10.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.431
	CNS0095610	Silvery flower (tetraploid) 1	4.289
	CNS0095611	Silvery flower (tetraploid) 2	5.875
	CNS0095612	Silvery flower (tetraploid) 3	3.706
	CNS0095613	Golden flower (tetraploid) 1	2.476
	CNS0095614	Golden flower (tetraploid) 2	3.551
	CNS0095615	Golden flower (tetraploid) 3	2.007
CRA001975	CRR073297	Stem 1	8.615
	CRR073298	Stem 2	8.273
	CRR073299	Stem 3	7.548
	CRR073300	Leaf 1	4.129
	CRR073301	Leaf 2	6.723
	CRR073302	Leaf 3	4.051
	CRR073303	Juvenile bud 1	2.952
	CRR073304	Juvenile bud 2	1.650
	CRR073305	Juvenile bud 3	8.452
	CRR073306	Third green 1	1.623
	CRR073307	Third green 2	2.736
	CRR073308	Third green 3	2.505
	CRR073309	Second white 1	0.790
	CRR073310	Second white 2	1.231
	CRR073311	Second white 3	0.571
	CRR073312	Silver flowering 1	0.540
	CRR073313	Silver flowering 2	1.108
	CRR073314	Silver flowering 3	1.358
	CRR073315	Gold flowering 1	29.036
	CRR073316	Gold flowering 2	44.695
	CRR073317	Gold flowering 3	34.694
	CRR073318	Tawny withering 1	20.692
	CRR073319	Tawny withering 2	13.409
	CRR073320	Tawny withering 3	17.828