Gene detail

Detail information of GWHGAAZE032813

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004510196.1	1.91251E-13	PREDICTED: uncharacterized protein LOC101501329 [Cicer arietinum]
trEMBL	tr\|A0A072TKV1\|A0A072TKV1_MEDTR	8E-14	Uncharacterized protein {ECO:0000313\|EMBL:KEH18057.1}
TAIR10	AT3G03560.1	9E-12	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000050	gene	37632	39271	+
GWHAAZE00000050	mRNA	38186	39271	+
GWHAAZE00000050	mRNA	37632	38670	+
GWHAAZE00000050	exon	39224	39271	+
GWHAAZE00000050	exon	38767	38862	+
GWHAAZE00000050	exon	38626	38667	+
GWHAAZE00000050	exon	38410	38519	+
GWHAAZE00000050	exon	38186	38325	+
GWHAAZE00000050	exon	38188	38670	+
GWHAAZE00000050	exon	37632	37667	+
GWHAAZE00000050	five_prime_UTR	38186	38325	+
GWHAAZE00000050	five_prime_UTR	38410	38489	+
GWHAAZE00000050	CDS	38490	38519	+
GWHAAZE00000050	CDS	38626	38667	+
GWHAAZE00000050	CDS	38767	38862	+
GWHAAZE00000050	CDS	39224	39271	+
GWHAAZE00000050	five_prime_UTR	37632	37667	+
GWHAAZE00000050	five_prime_UTR	38188	38327	+
GWHAAZE00000050	CDS	38328	38564	+
GWHAAZE00000050	three_prime_UTR	38565	38670	+

Transcript Sequence
>GWHTAAZE032851 AGGCAGGATACAATTTGAGGTCCTACTTCTAAACCTTTGTCCAATATAATGGCGAACATGATATATGAAGAGAAAATCGATGAAAACATTCTTCATCCTCCCAAAGTCTCTGATCGAACTGCTTCCTTTGCTTTAGAAGGAAGAGGGCCCTGGCATAGGAGGGGTTCGAATCAATGGTGATGCAAAACTAGGAGAGGAACTTATAGCTTGTGCATATCCTATGGGCAGAACTTCCCTGTGTAATTTTCCGTGGGTCCATTATCTTCAGGATAACACAAAAAAGTACATTGAGGGGCAACAATCCAGAATATATATAGTAACAGCTGATGATGTTGATACAATTATTGCCATCGAGTACGTAGCTATGGATCAAAAAGAGCGTCTGGTATCCTTCCTTTTCCTCTGCACCATTCCCCCTATCAATAATTTTTTTTCT >GWHTAAZE032852 ATGATTGTATTGACGATGAGATGTTTCAAGAGCAAGGCAGGATACAATTTGAGGTCCTACTTCTAAACCTTTGTCCAATATAATGGCGAACATGATATATGAAGAGAAAATCGATGAAAACATTCTTCATCCTCCCAAAGTCTCTGATCGAACTGCTTCCTTTGCTTTAGAAGGGTATGAATCCTGTGCTCTTCTTTGATTTTTGGGAAAAAATGGTGTTGAACGTTTGGAAAATGAGAAATAACTGGCTGTCATTAGAAGAGGGCCCTGGCATAGGAGGGGTTCGAATCAATGGTGATGCAAAACTAGGAGAGGAACTTATAGCTTGTGCATATCCTATGGGCAGAACTTCCCTGTGTAATTTTCCGTTAAAAAAGTATTCCACTCACATCTACATAAAATTTATCACATAAGCGATTATCCATATCCGCGTACTAAAATTTTCTTTTTGACAACTGTTTCCCGGCAAATTAGTGGGTCCATTATCTTCAGGATAACACAAAAAAGTACATTGAGGTA

Network for GWHGAAZE032813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0068

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.150
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.165
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.406
	SRR3591711	White flower	0.037
	SRR3591712	Green floral bud	0.180
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.352
	SRR8316896	Juvenile bud stage	6.617
	SRR8316897	Juvenile bud stage	6.078
	SRR8316894	Third green stage	3.802
	SRR8316900	Third green stage	6.011
	SRR8316901	Third green stage	6.295
	SRR8316898	Complete white stage	1.485
	SRR8316899	Complete white stage	6.963
	SRR8316903	Complete white stage	4.265
	SRR8316902	Silver flowering stage	2.271
	SRR8316904	Silver flowering stage	3.780
	SRR8316905	Silver flowering stage	1.831
	SRR8316906	Gold flowering stage	4.486
	SRR8316907	Gold flowering stage	3.526
	SRR8316908	Gold flowering stage	3.275
SRP132670	SRR6706286	Control	0.767
	SRR6706287	Light intensity 50%	1.346
	SRR6706288	Light intensity 20%	0.796
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.130
	CNS0095593	Slightly white alabastrum(diploid) 2	7.547
	CNS0095594	Slightly white alabastrum(diploid) 3	5.284
	CNS0095595	Whole white alabastrum(diploid) 2	4.934
	CNS0095596	Whole white alabastrum(diploid) 3	5.317
	CNS0095597	Whole white alabastrum(diploid) 4	5.170
	CNS0095598	Silvery flower (diploied) 1	10.899
	CNS0095599	Silvery flower (diploied) 2	10.854
	CNS0095600	Silvery flower (diploied) 3	1.985
	CNS0095601	Golden flower (diploid) 1	7.497
	CNS0095602	Golden flower (diploid) 2	2.103
	CNS0095603	Golden flower (diploid) 3	3.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.587
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.994
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.659
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.260
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.817
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.138
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	0.072
CRA001975	CRR073297	Stem 1	1.292
	CRR073298	Stem 2	1.159
	CRR073299	Stem 3	0.562
	CRR073300	Leaf 1	1.294
	CRR073301	Leaf 2	1.615
	CRR073302	Leaf 3	0.219
	CRR073303	Juvenile bud 1	0.274
	CRR073304	Juvenile bud 2	0.152
	CRR073305	Juvenile bud 3	0.291
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.072
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.090
	CRR073316	Gold flowering 2	0.198
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.552
	CRR073319	Tawny withering 2	0.342
	CRR073320	Tawny withering 3	0.038