Gene detail

Detail information of GWHGAAZE032816

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010327274.1	4.72101E-49	PREDICTED: uncharacterized protein LOC101253835 isoform X3 [Solanum lycopersicum]
trEMBL	tr\|K4CZG7\|K4CZG7_SOLLC	2E-51	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g039430.1.1}
TAIR10	AT3G03560.1	9E-37	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000050	gene	52015	54531	+
GWHAAZE00000050	mRNA	52015	54531	+
GWHAAZE00000050	exon	52015	52118	+
GWHAAZE00000050	exon	52678	52814	+
GWHAAZE00000050	exon	52901	53010	+
GWHAAZE00000050	exon	53117	53159	+
GWHAAZE00000050	exon	53245	53336	+
GWHAAZE00000050	exon	53855	53903	+
GWHAAZE00000050	exon	54380	54531	+
GWHAAZE00000050	CDS	52015	52118	+
GWHAAZE00000050	CDS	52678	52814	+
GWHAAZE00000050	CDS	52901	53010	+
GWHAAZE00000050	CDS	53117	53159	+
GWHAAZE00000050	CDS	53245	53336	+
GWHAAZE00000050	CDS	53855	53903	+
GWHAAZE00000050	CDS	54380	54531	+

Transcript Sequence
>GWHTAAZE032855 ATGGATTCTTCAAGTTCAACCGTTCTCAAGCCATTACCTCCCAACTCGCCTATAGGGCAAAATGAAGGGATTGAAAAAACCTCCGTGGCAGAAGATACCTCGAGGGAGGATACACTTGGAGGTCCTGCTTCTGAAACTTTATCCAATATAACAGCGAACATGATATATGAAGAACAGATCAATGAAAACATTCTTCACGCTCCCACAGTCGCTGATCGGACTGCTTCTTCTGCTTTAGAAGAAGAGGGCCTTGGCATAGAAGGGGTTCGAATCAATGGGGATGCAAAACTAGGAGGGGAACTTATAGCTTGTCCATATCCTATACGCGAAACTTCTGTGTGTAATTTTCAGTGGCTCCGTTATCTTCAGGATAACACAAAAAAGTACATTGAGGGAGCAACAAATCCAGAATATATAGTAACAGCTGATGATGTTGATACAATTATTGCCATCGAGTGCGTAGCTATGGATCACAAAGGGCATCTGGGAAAACCATTCAGTGTCATGGCAAATAATGGGAAGAGAATCACATGTGAACCAGATATGCAACAGGAAATTGACAGATACATTTATGAAGGCCTAGCCACATTCAATGTTCTGTTCTTGGTAGGTTTGCTTGAGCCTTACCATAATATTATATTATTGATATTTTCGAGGTCAGCTTTGATCTTCTATAGCTTATGCTAA

Network for GWHGAAZE032816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0130

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.035
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.197
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.227
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	12.776
	SRR8316896	Juvenile bud stage	16.618
	SRR8316897	Juvenile bud stage	1.719
	SRR8316894	Third green stage	6.625
	SRR8316900	Third green stage	8.840
	SRR8316901	Third green stage	10.184
	SRR8316898	Complete white stage	5.907
	SRR8316899	Complete white stage	10.683
	SRR8316903	Complete white stage	9.961
	SRR8316902	Silver flowering stage	12.510
	SRR8316904	Silver flowering stage	17.167
	SRR8316905	Silver flowering stage	8.783
	SRR8316906	Gold flowering stage	33.209
	SRR8316907	Gold flowering stage	32.223
	SRR8316908	Gold flowering stage	11.609
SRP132670	SRR6706286	Control	13.194
	SRR6706287	Light intensity 50%	12.805
	SRR6706288	Light intensity 20%	10.503
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.337
	CNS0095593	Slightly white alabastrum(diploid) 2	7.815
	CNS0095594	Slightly white alabastrum(diploid) 3	7.740
	CNS0095595	Whole white alabastrum(diploid) 2	7.682
	CNS0095596	Whole white alabastrum(diploid) 3	4.701
	CNS0095597	Whole white alabastrum(diploid) 4	8.193
	CNS0095598	Silvery flower (diploied) 1	19.794
	CNS0095599	Silvery flower (diploied) 2	12.372
	CNS0095600	Silvery flower (diploied) 3	2.514
	CNS0095601	Golden flower (diploid) 1	17.456
	CNS0095602	Golden flower (diploid) 2	10.846
	CNS0095603	Golden flower (diploid) 3	9.929
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.084
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.278
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.965
	CNS0095610	Silvery flower (tetraploid) 1	0.261
	CNS0095611	Silvery flower (tetraploid) 2	0.437
	CNS0095612	Silvery flower (tetraploid) 3	0.709
	CNS0095613	Golden flower (tetraploid) 1	0.022
	CNS0095614	Golden flower (tetraploid) 2	0.674
	CNS0095615	Golden flower (tetraploid) 3	0.355
CRA001975	CRR073297	Stem 1	13.117
	CRR073298	Stem 2	7.012
	CRR073299	Stem 3	1.759
	CRR073300	Leaf 1	7.424
	CRR073301	Leaf 2	6.954
	CRR073302	Leaf 3	0.249
	CRR073303	Juvenile bud 1	1.339
	CRR073304	Juvenile bud 2	0.252
	CRR073305	Juvenile bud 3	1.667
	CRR073306	Third green 1	0.153
	CRR073307	Third green 2	0.443
	CRR073308	Third green 3	0.104
	CRR073309	Second white 1	0.061
	CRR073310	Second white 2	0.438
	CRR073311	Second white 3	0.373
	CRR073312	Silver flowering 1	0.168
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.367
	CRR073315	Gold flowering 1	1.211
	CRR073316	Gold flowering 2	6.670
	CRR073317	Gold flowering 3	0.450
	CRR073318	Tawny withering 1	4.864
	CRR073319	Tawny withering 2	7.553
	CRR073320	Tawny withering 3	2.851