Gene detail

Detail information of GWHGAAZE032818

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010327274.1	3.60935E-68	PREDICTED: uncharacterized protein LOC101253835 isoform X3 [Solanum lycopersicum]
trEMBL	tr\|A0A068ULJ9\|A0A068ULJ9_COFCA	4E-66	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09321.1}
TAIR10	AT3G03560.1	1E-50	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000050	gene	60928	65229	+
GWHAAZE00000050	mRNA	60928	65229	+
GWHAAZE00000050	exon	60928	61105	+
GWHAAZE00000050	exon	61192	61301	+
GWHAAZE00000050	exon	61407	61449	+
GWHAAZE00000050	exon	61538	61629	+
GWHAAZE00000050	exon	62069	62117	+
GWHAAZE00000050	exon	62577	62647	+
GWHAAZE00000050	exon	62993	63136	+
GWHAAZE00000050	exon	63543	63622	+
GWHAAZE00000050	exon	64284	64329	+
GWHAAZE00000050	exon	64987	65229	+
GWHAAZE00000050	CDS	60928	61105	+
GWHAAZE00000050	CDS	61192	61301	+
GWHAAZE00000050	CDS	61407	61449	+
GWHAAZE00000050	CDS	61538	61629	+
GWHAAZE00000050	CDS	62069	62117	+
GWHAAZE00000050	CDS	62577	62647	+
GWHAAZE00000050	CDS	62993	63136	+
GWHAAZE00000050	CDS	63543	63622	+
GWHAAZE00000050	CDS	64284	64329	+
GWHAAZE00000050	CDS	64987	65229	+

Transcript Sequence
>GWHTAAZE032857 ATGATACTGTCTTTCTTCATTCTTATAGCTTACTTTCACAGGGAGGATACACTTGGTGATCCTGCTTCTGAAACTTTGTTCAATATAACGGCGAACATGATATATGAAGAGAAGATCAATGAAAACATTCTTCACGCTCCCACAGTCGCTGATCGGACTGCTTCTTCTGCTTTAGAAGAAGAGGGCCCTGGCATAGAAGGGGTTCGAATCAATGGGGATGCAAAACTGGGAGGGGAACTTATAGCTTGTCCATATCCTATACGCGAAACTTCTCTGTGTAATTTTCAGTGGCTCCGTTATCTTCAGGATAACACAAAAATGTACATTGAGGGAGCAACAAATCCAGAATATATAGTAACAGCTGATGATGTTGATACAATTATTGCCTTCGAGTGTGTAGCTATGGGTCGCAAAGAGCATCTGGGAAAACCATTCAGAGTTATGGCAAATAATGGGAAGAGAATCACATGTGAACCAGATATGCAGCAGGAAATTGACAGATACATTTCTGAAGGCCTAGCCACGTTCAATGTTCTGTTCTTGCCAGATTCTCATGGCGGCGTTGTGCCAACAACTCTCGTTTTGGAAAAGTCACGCTACCTTTTTAGGATCTATGGACCACCAGCTTTTGAAATTTTTAGACCACCAGCTACTGAAATTTCGAAGAAATTTTGTGATGTTACTTCGATCGAAATTCCTCTTGGGCGCTCTGCAGATTTTGTATTAAGATGTTCCGATGGTTCTTCTCATTCTTTTAAGACAGGCAGAATACGTGATATGATTGTATTGACGATGAGATGTTTCAAGAGCAAGAAGGGTATGAATCCTGTGCTCTTCTTTGATTTTTGGGAAAAAATGGTGTTGAACGTTTGGAAAATGAGAAATAACTGGCTGTCATTAGAAGAGGGCCCTGGCATAGGAGGGGTTCGAATCAATGGTGATGCAAAACTAGGAGAGGAACTTATAGCTTGTGCATATCCTATGGGCAGAACTTCCCTGTGTAATTTTCCGTTAAAAAAGTATTCCACTCACATCTACATAAAATTTATCACATAG

Network for GWHGAAZE032818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.014
	SRR3591706	second leaf	0.078
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.301
	SRR3591711	White flower	0.008
	SRR3591712	Green floral bud	0.478
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.467
	SRR8316896	Juvenile bud stage	5.586
	SRR8316897	Juvenile bud stage	3.843
	SRR8316894	Third green stage	1.778
	SRR8316900	Third green stage	3.718
	SRR8316901	Third green stage	4.379
	SRR8316898	Complete white stage	1.463
	SRR8316899	Complete white stage	3.967
	SRR8316903	Complete white stage	2.549
	SRR8316902	Silver flowering stage	2.037
	SRR8316904	Silver flowering stage	1.879
	SRR8316905	Silver flowering stage	0.867
	SRR8316906	Gold flowering stage	2.658
	SRR8316907	Gold flowering stage	4.216
	SRR8316908	Gold flowering stage	3.027
SRP132670	SRR6706286	Control	3.481
	SRR6706287	Light intensity 50%	5.556
	SRR6706288	Light intensity 20%	4.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.705
	CNS0095593	Slightly white alabastrum(diploid) 2	2.534
	CNS0095594	Slightly white alabastrum(diploid) 3	3.163
	CNS0095595	Whole white alabastrum(diploid) 2	2.342
	CNS0095596	Whole white alabastrum(diploid) 3	1.429
	CNS0095597	Whole white alabastrum(diploid) 4	1.557
	CNS0095598	Silvery flower (diploied) 1	3.086
	CNS0095599	Silvery flower (diploied) 2	2.206
	CNS0095600	Silvery flower (diploied) 3	1.373
	CNS0095601	Golden flower (diploid) 1	2.934
	CNS0095602	Golden flower (diploid) 2	1.560
	CNS0095603	Golden flower (diploid) 3	2.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.633
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.010
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.927
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.423
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.665
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.104
	CNS0095613	Golden flower (tetraploid) 1	0.101
	CNS0095614	Golden flower (tetraploid) 2	0.007
	CNS0095615	Golden flower (tetraploid) 3	0.155
CRA001975	CRR073297	Stem 1	4.029
	CRR073298	Stem 2	3.018
	CRR073299	Stem 3	0.764
	CRR073300	Leaf 1	4.638
	CRR073301	Leaf 2	3.772
	CRR073302	Leaf 3	1.111
	CRR073303	Juvenile bud 1	1.492
	CRR073304	Juvenile bud 2	0.658
	CRR073305	Juvenile bud 3	0.800
	CRR073306	Third green 1	0.122
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.157
	CRR073309	Second white 1	0.526
	CRR073310	Second white 2	0.169
	CRR073311	Second white 3	0.159
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.042
	CRR073315	Gold flowering 1	0.010
	CRR073316	Gold flowering 2	0.451
	CRR073317	Gold flowering 3	0.030
	CRR073318	Tawny withering 1	0.698
	CRR073319	Tawny withering 2	0.221
	CRR073320	Tawny withering 3	0.443