Gene detail

Detail information of GWHGAAZE032825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010241050.1	6.1619E-117	PREDICTED: caffeic acid 3-O-methyltransferase 1 [Nelumbo nucifera]
COG	YP_007039608.1	8E-39	Methyltransferase
Swissprot	tr\|Q00763\|COMT1_POPTM	7E-116	Caffeic acid 3-O-methyltransferase 1
trEMBL	tr\|D7MTQ0\|D7MTQ0_ARALL	5E-116	O-methyltransferase 1 {ECO:0000313\|EMBL:EFH40566.1}
TAIR10	AT5G54160.1	2E-85	O-methyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000049	gene	9401	12651	+
GWHAAZE00000049	mRNA	9401	12651	+
GWHAAZE00000049	exon	9401	9843	+
GWHAAZE00000049	exon	10228	10538	+
GWHAAZE00000049	exon	11366	11430	+
GWHAAZE00000049	exon	12358	12651	+
GWHAAZE00000049	five_prime_UTR	9401	9427	+
GWHAAZE00000049	CDS	9428	9843	+
GWHAAZE00000049	CDS	10228	10538	+
GWHAAZE00000049	CDS	11366	11430	+
GWHAAZE00000049	CDS	12358	12651	+

Transcript Sequence
>GWHTAAZE032864 TTTTTTTCGTCTTATATTAAAATAAAGATGAGTTTTATGAAATCAAGTCCCACATTAAAAGACGAAAACGATGCATTTGCTTGTGCCTCGCAAGTAACCTCCTCTTACATTGTTCCTATGGTCCTAAAGGCGGCTCTTGAGCTCGGCTTGTTTGATATTATAGCAAAAAAGGGACAAATCCCACCTTCAGAAATGGCTTCTCACCTACTTGCAAAGAATAAGGATGCACCCGCCATGCTTGACAGGATGCTGAGGTTGCTTGCTACTCACTCTATTCTAACTTGTTCTCTAAGCAATCTTGAAGAAGGCGGTGGTGGGGAGGTTGAGAGGCTCTATGGGCTCCCCCCGGCCGGAGAATTATTCGTGCAAGAAGTAGGTTGTTGCTCCCGTTTGTTGACCTCTTTTTTTCAATTCTCGAACACTGCAAATGGCATTGACTTCTGGCAACATTTGAAAGATGCAATTCTTGATGGTGGTGTACCATTTCAAAGAGCCTGTGGGATGCCCTTTTACCAATATATTCGCGCAAGTCCCGATCGAAGCAAGAACTTTGATAGTTCAATGAGTGAACAAACCAACACAATTATGACCAAAACCCTAAATACATACAAAGGATTTGAGGGGATTAATTCACTGGTTGATGTTGGTGGTGGAATTGGTACAACTCTCAAATTGATTACCTCCAAGTACCCTTCTATTAAGGGCATCAATTTTGATTTGCCTAGTGTCATAAAAAATGCACCCATTCAACATGGCATTCAGCTTGTTGCAGGTGATATGTTTGTGAGCATTCCCAAGAGTGAAGCCATTCTCTTAAAGTGGATATTGCACAATTGGGATGATGAACAGTGCTTGAAAATTCTTAAGAATTGCTATGAAGCTATACCTACAAGTGGGAAGGTTATTCTTGTAGAGTTTATAGTGCCGTTGGTACCAGACACCAGCATTTCCAGCAAGTTGATTTCTCAACTTGACAACATTATGTTATTCCTCCTAGGAGGAAAGGAGAGGACTATAAATGAATTTGAAGCCTTGTCCAAAGCTGCTGGTTTTTCAAAGATTCAACTTCACTCTTATGATTACATCACTTCTGTTGTGGAAATCTTCAAATAA

Network for GWHGAAZE032825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08100.12	Dimerisation	31	79	5.30E-18
PF00891.19	Methyltransf_2	139	343	1.30E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13066	E2.1.1.68, COMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0046983	molecular_function	protein dimerization activity
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.633
	SRR3591706	second leaf	1.605
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	15.905
	SRR3591709	Stem	4.162
	SRR3591710	White floral bud	8.100
	SRR3591711	White flower	0.737
	SRR3591712	Green floral bud	9.650
	SRR3591713	Yellow flower	2.517
SRP173429	SRR8316895	Juvenile bud stage	6.363
	SRR8316896	Juvenile bud stage	6.029
	SRR8316897	Juvenile bud stage	3.175
	SRR8316894	Third green stage	2.488
	SRR8316900	Third green stage	14.541
	SRR8316901	Third green stage	15.367
	SRR8316898	Complete white stage	4.809
	SRR8316899	Complete white stage	20.373
	SRR8316903	Complete white stage	7.493
	SRR8316902	Silver flowering stage	4.931
	SRR8316904	Silver flowering stage	5.071
	SRR8316905	Silver flowering stage	1.269
	SRR8316906	Gold flowering stage	4.229
	SRR8316907	Gold flowering stage	5.021
	SRR8316908	Gold flowering stage	6.338
SRP132670	SRR6706286	Control	0.713
	SRR6706287	Light intensity 50%	1.479
	SRR6706288	Light intensity 20%	1.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.487
	CNS0095593	Slightly white alabastrum(diploid) 2	39.622
	CNS0095594	Slightly white alabastrum(diploid) 3	24.462
	CNS0095595	Whole white alabastrum(diploid) 2	41.615
	CNS0095596	Whole white alabastrum(diploid) 3	27.668
	CNS0095597	Whole white alabastrum(diploid) 4	23.674
	CNS0095598	Silvery flower (diploied) 1	13.882
	CNS0095599	Silvery flower (diploied) 2	24.637
	CNS0095600	Silvery flower (diploied) 3	19.252
	CNS0095601	Golden flower (diploid) 1	2.078
	CNS0095602	Golden flower (diploid) 2	2.605
	CNS0095603	Golden flower (diploid) 3	3.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.267
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.381
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	118.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.531
	CNS0095610	Silvery flower (tetraploid) 1	10.753
	CNS0095611	Silvery flower (tetraploid) 2	13.526
	CNS0095612	Silvery flower (tetraploid) 3	15.701
	CNS0095613	Golden flower (tetraploid) 1	10.200
	CNS0095614	Golden flower (tetraploid) 2	4.549
	CNS0095615	Golden flower (tetraploid) 3	0.863
CRA001975	CRR073297	Stem 1	12.487
	CRR073298	Stem 2	10.586
	CRR073299	Stem 3	1.254
	CRR073300	Leaf 1	9.945
	CRR073301	Leaf 2	12.928
	CRR073302	Leaf 3	2.165
	CRR073303	Juvenile bud 1	7.149
	CRR073304	Juvenile bud 2	0.788
	CRR073305	Juvenile bud 3	6.640
	CRR073306	Third green 1	1.434
	CRR073307	Third green 2	1.785
	CRR073308	Third green 3	1.636
	CRR073309	Second white 1	1.059
	CRR073310	Second white 2	0.446
	CRR073311	Second white 3	0.048
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000