Detail information of GWHGAAZE032841


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352955.13.34272E-51PREDICTED: F-box protein At3g07870-like [Solanum tuberosum]
Swissprottr|Q8GXC7|FBK50_ARATH1E-21F-box/kelch-repeat protein At3g06240
trEMBLtr|M1BWG5|M1BWG5_SOLTU1E-51Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054509}
TAIR10AT3G06240.13E-18F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000053gene328405329655+
GWHAAZE00000053mRNA328405329655+
GWHAAZE00000053exon328405329655+
GWHAAZE00000053CDS328405329655+
Transcript Sequence

Network for GWHGAAZE032841

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box7425.00E-08
PF07734.14FBA_12183261.20E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.214
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.166
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.095
SRR8316896Juvenile bud stage 1.016
SRR8316897Juvenile bud stage 0.945
SRR8316894Third green stage 0.556
SRR8316900Third green stage 1.250
SRR8316901Third green stage 1.816
SRR8316898Complete white stage 0.076
SRR8316899Complete white stage 0.944
SRR8316903Complete white stage 1.246
SRR8316902Silver flowering stage0.294
SRR8316904Silver flowering stage1.003
SRR8316905Silver flowering stage0.303
SRR8316906Gold flowering stage 0.821
SRR8316907Gold flowering stage 0.511
SRR8316908Gold flowering stage 0.562
SRP132670SRR6706286Control0.908
SRR6706287Light intensity 50%1.087
SRR6706288Light intensity 20%1.600
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.287
CNS0095593Slightly white alabastrum(diploid) 20.586
CNS0095594Slightly white alabastrum(diploid) 30.080
CNS0095595Whole white alabastrum(diploid) 20.175
CNS0095596Whole white alabastrum(diploid) 30.580
CNS0095597Whole white alabastrum(diploid) 40.270
CNS0095598Silvery flower (diploied) 10.760
CNS0095599Silvery flower (diploied) 20.320
CNS0095600Silvery flower (diploied) 31.123
CNS0095601Golden flower (diploid) 10.067
CNS0095602Golden flower (diploid) 20.982
CNS0095603Golden flower (diploid) 31.081
CNS0095604Slightly white alabastrum(tetraploid) 10.898
CNS0095605Slightly white alabastrum(tetraploid) 20.432
CNS0095606Slightly white alabastrum(tetraploid) 32.137
CNS0095607Whole white alabastrum(tetraploid) 10.721
CNS0095608Whole white alabastrum(tetraploid) 20.422
CNS0095609Whole white alabastrum(tetraploid) 31.654
CNS0095610Silvery flower (tetraploid) 10.810
CNS0095611Silvery flower (tetraploid) 20.924
CNS0095612Silvery flower (tetraploid) 30.743
CNS0095613Golden flower (tetraploid) 10.310
CNS0095614Golden flower (tetraploid) 20.745
CNS0095615Golden flower (tetraploid) 30.700
CRA001975CRR073297Stem 10.442
CRR073298Stem 20.616
CRR073299Stem 30.319
CRR073300Leaf 10.924
CRR073301Leaf 20.384
CRR073302Leaf 30.177
CRR073303Juvenile bud 10.283
CRR073304Juvenile bud 20.060
CRR073305Juvenile bud 30.254
CRR073306Third green 10.032
CRR073307Third green 20.112
CRR073308Third green 30.038
CRR073309Second white 10.000
CRR073310Second white 20.009
CRR073311Second white 30.173
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.214
CRR073314Silver flowering 30.084
CRR073315Gold flowering 10.105
CRR073316Gold flowering 20.038
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.203
CRR073319Tawny withering 20.433
CRR073320Tawny withering 30.707