Gene detail

Detail information of GWHGAAZE032852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594635.1	7.84569E-26	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Nicotiana tomentosiformis]
Swissprot	tr\|F4J9Q6\|FKB43_ARATH	3E-17	Peptidyl-prolyl cis-trans isomerase FKBP43
trEMBL	tr\|A0A067ELB9\|A0A067ELB9_CITSI	4E-16	Uncharacterized protein {ECO:0000313\|EMBL:KDO55989.1} (Fragment)
TAIR10	AT3G12340.1	2E-16	FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000053	gene	539670	546644	+
GWHAAZE00000053	mRNA	539670	546644	+
GWHAAZE00000053	exon	539670	539950	+
GWHAAZE00000053	exon	540682	540785	+
GWHAAZE00000053	exon	541353	541579	+
GWHAAZE00000053	exon	541753	542033	+
GWHAAZE00000053	exon	544450	544578	+
GWHAAZE00000053	exon	544647	544895	+
GWHAAZE00000053	exon	545272	545320	+
GWHAAZE00000053	exon	546372	546644	+
GWHAAZE00000053	CDS	539670	539950	+
GWHAAZE00000053	CDS	540682	540785	+
GWHAAZE00000053	CDS	541353	541579	+
GWHAAZE00000053	CDS	541753	542033	+
GWHAAZE00000053	CDS	544450	544578	+
GWHAAZE00000053	CDS	544647	544895	+
GWHAAZE00000053	CDS	545272	545320	+
GWHAAZE00000053	CDS	546372	546644	+

Transcript Sequence
>GWHTAAZE032891 TGTTTGCACTTTGTCAGTCAGGCCACACTTGCAGATCAGAGTGGGCTTTGGACATCTAGGAGCGTGGTTCGATGTGCCGTGGGGAGTAAACCTTCGGTTTTTATTTGCTCATTGTCAATAGGGGAGGTTGCTTCTTGTAAGTTGGATCTTGAGTTTGAGGAGAAAGATGATGTTGTTTTCTCTGTTAATGGTCCCCGAGGAGTTCATCTTGCCAGATATTTTCTCGATTCCAATGGTGCCAATAGTACTAGCGCTACTGTCACCACCAATGCCCCTAATCCTTTGGACAGAAAAGAGGACATAGCAAAGCCGAGTTGTGAGGGACCCAGTTACTTTAACTCTCAAGATAGGAATACTACCTACATCGACGAGGTTGAAGTTGGAGCTGCTAAGAAGGATCACCGATCCATTATCACCATATTAAAGAGGTCTCTAGCAAAAGCGAAGGTACAAACTTCCTTGATGGTTCAAGCTTCACACATGAGAGATGAGGCCAAGACTTTCTTGCCAAAACCGTCAATAATCTCACTTCTAGCAGATTTTAGAATTCCCAGTATAGCTGCTGCTGATGGGTCGGAACAGAATTATGCAACATCTCAAATTTTACTATGCTGTTTGCACTTTGTCGGTCAGGCCACACTTGCAGACTGGAGTGGGCTTTGGACTTCTAGGAGCGTGGTTCGATGTGCCGTGGGGAGTAAACCTCCTGTTTTTATATGCTCATTGTCAATAGGGGAGGTTGCTTCTTGTAAGTTGGATCTTGAGTTTGAGGAGAAAGATGATGTTGTTTTCTCTGTTAAGGGTCCCCGAGGAGTTCATCTTGCCAGTTATTTTCTCAACTCCACCGGTGCCAATAGTACTAGCACTATTCTCACCACCGATGCCCCTAAACTGAGTGTAGTCCACAAATGCGATTCTGAGGTGGTAAAAGAAGTTGACCTCGTGTTACGTGATGGTGGAAAGCTGAACAACAATAGTGGTTCGGAGAAGCTATTATTACAAGAGAATGGAAATGGTTTGAGAGGACTTCTTGTGTTTGATGATAACCATTTTGTGATAATATATACATACACGTATATTCATTCGACCAGCCCAAGTTGGAAAGGTGATGAAGGCAACAATGGGCTTAGACATTGCGGGAAAGTGAAGAAAAAGAAAAGAAAAGAAACCGTCATGGAGTGCAAACTCGTGGAGGATGATGCTAGAAATGCTGCTCATCAAGCAATTAGGGATAAAAACTTTGGAACTGTCACAACAGATTCATGTCCGAGCCAAGATAAAAGTTTGTCAATCTCGCCTCAGAAAAAACTAAAAGTAGAGATAAAGTTATGGAAGATGATGATACACATCTTGACAAGTACATTATCAGGGAAAAAGATCCTTTTCAGCAAGAACAGGACTAGTACATTATTAAGAAAGGAGAAAAGGAAATTGCAAAAGAAATGGCTAAAAGCGGAAGTTGTAAAAGAGAAGAAAAATCACCCAAGAGACCAAAAGTCAGCAAAAGAAGAAGTGGTCAACATGATGGAAATTGAAAGGGGTTCGAGTTCTTTTGCCTACGTTGTAGTAGTTGACAAGTTTCCTTTGAAGTAG

Network for GWHGAAZE032852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17800.2	NPL	30	71	3.20E-06
PF17800.2	NPL	236	275	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.566
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.472
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.069
	SRR8316896	Juvenile bud stage	7.188
	SRR8316897	Juvenile bud stage	3.576
	SRR8316894	Third green stage	3.837
	SRR8316900	Third green stage	7.087
	SRR8316901	Third green stage	7.872
	SRR8316898	Complete white stage	2.031
	SRR8316899	Complete white stage	8.760
	SRR8316903	Complete white stage	5.524
	SRR8316902	Silver flowering stage	1.434
	SRR8316904	Silver flowering stage	1.472
	SRR8316905	Silver flowering stage	0.508
	SRR8316906	Gold flowering stage	2.176
	SRR8316907	Gold flowering stage	2.944
	SRR8316908	Gold flowering stage	1.050
SRP132670	SRR6706286	Control	11.118
	SRR6706287	Light intensity 50%	13.735
	SRR6706288	Light intensity 20%	14.807
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.790
	CNS0095593	Slightly white alabastrum(diploid) 2	9.629
	CNS0095594	Slightly white alabastrum(diploid) 3	10.661
	CNS0095595	Whole white alabastrum(diploid) 2	6.284
	CNS0095596	Whole white alabastrum(diploid) 3	5.590
	CNS0095597	Whole white alabastrum(diploid) 4	8.362
	CNS0095598	Silvery flower (diploied) 1	3.285
	CNS0095599	Silvery flower (diploied) 2	5.096
	CNS0095600	Silvery flower (diploied) 3	1.918
	CNS0095601	Golden flower (diploid) 1	3.704
	CNS0095602	Golden flower (diploid) 2	2.340
	CNS0095603	Golden flower (diploid) 3	1.979
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.959
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.982
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.689
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.492
	CNS0095610	Silvery flower (tetraploid) 1	3.429
	CNS0095611	Silvery flower (tetraploid) 2	1.262
	CNS0095612	Silvery flower (tetraploid) 3	2.728
	CNS0095613	Golden flower (tetraploid) 1	0.663
	CNS0095614	Golden flower (tetraploid) 2	0.810
	CNS0095615	Golden flower (tetraploid) 3	0.256
CRA001975	CRR073297	Stem 1	11.662
	CRR073298	Stem 2	9.346
	CRR073299	Stem 3	0.740
	CRR073300	Leaf 1	13.800
	CRR073301	Leaf 2	15.517
	CRR073302	Leaf 3	0.885
	CRR073303	Juvenile bud 1	1.031
	CRR073304	Juvenile bud 2	0.325
	CRR073305	Juvenile bud 3	1.142
	CRR073306	Third green 1	0.221
	CRR073307	Third green 2	0.076
	CRR073308	Third green 3	0.120
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.308
	CRR073311	Second white 3	0.115
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.238
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.174
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.548
	CRR073319	Tawny withering 2	2.436
	CRR073320	Tawny withering 3	1.130