Detail information of GWHGAAZE032881


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN75612.16.18639E-90hypothetical protein VITISV_022290 [Vitis vinifera]
trEMBLtr|A5AFS9|A5AFS9_VITVI2E-90Putative uncharacterized protein {ECO:0000313|EMBL:CAN75612.1}
TAIR10AT5G38720.15E-54Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000056gene137939142223+
GWHAAZE00000056mRNA137939142223+
GWHAAZE00000056exon137939138172+
GWHAAZE00000056exon139439139618+
GWHAAZE00000056exon139906140028+
GWHAAZE00000056exon140124140408+
GWHAAZE00000056exon140754140891+
GWHAAZE00000056exon141249141346+
GWHAAZE00000056exon141548141758+
GWHAAZE00000056exon142138142223+
GWHAAZE00000056five_prime_UTR137939138172+
GWHAAZE00000056five_prime_UTR139439139485+
GWHAAZE00000056CDS139486139618+
GWHAAZE00000056CDS139906140028+
GWHAAZE00000056CDS140124140408+
GWHAAZE00000056CDS140754140891+
GWHAAZE00000056CDS141249141346+
GWHAAZE00000056CDS141548141758+
GWHAAZE00000056CDS142138142223+
Transcript Sequence

Network for GWHGAAZE032881

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12923.8RRP72343579.70E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14545RRP7 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.398
SRR3591706second leaf12.562
SRR3591707mature leaf12.415
SRR3591708Shoot apex17.637
SRR3591709Stem14.453
SRR3591710White floral bud25.751
SRR3591711White flower21.363
SRR3591712Green floral bud20.536
SRR3591713Yellow flower20.160
SRP173429 SRR8316895Juvenile bud stage 19.370
SRR8316896Juvenile bud stage 27.277
SRR8316897Juvenile bud stage 10.408
SRR8316894Third green stage 12.810
SRR8316900Third green stage 34.584
SRR8316901Third green stage 32.435
SRR8316898Complete white stage 9.126
SRR8316899Complete white stage 37.846
SRR8316903Complete white stage 18.993
SRR8316902Silver flowering stage12.951
SRR8316904Silver flowering stage15.090
SRR8316905Silver flowering stage8.880
SRR8316906Gold flowering stage 26.943
SRR8316907Gold flowering stage 29.350
SRR8316908Gold flowering stage 21.685
SRP132670SRR6706286Control47.602
SRR6706287Light intensity 50%45.416
SRR6706288Light intensity 20%46.756
CNP0000432CNS0095592Slightly white alabastrum(diploid) 146.260
CNS0095593Slightly white alabastrum(diploid) 247.817
CNS0095594Slightly white alabastrum(diploid) 358.610
CNS0095595Whole white alabastrum(diploid) 240.731
CNS0095596Whole white alabastrum(diploid) 337.643
CNS0095597Whole white alabastrum(diploid) 442.978
CNS0095598Silvery flower (diploied) 137.430
CNS0095599Silvery flower (diploied) 236.084
CNS0095600Silvery flower (diploied) 324.344
CNS0095601Golden flower (diploid) 136.264
CNS0095602Golden flower (diploid) 221.121
CNS0095603Golden flower (diploid) 320.248
CNS0095604Slightly white alabastrum(tetraploid) 127.729
CNS0095605Slightly white alabastrum(tetraploid) 228.876
CNS0095606Slightly white alabastrum(tetraploid) 323.133
CNS0095607Whole white alabastrum(tetraploid) 127.362
CNS0095608Whole white alabastrum(tetraploid) 227.627
CNS0095609Whole white alabastrum(tetraploid) 320.150
CNS0095610Silvery flower (tetraploid) 121.311
CNS0095611Silvery flower (tetraploid) 217.716
CNS0095612Silvery flower (tetraploid) 315.859
CNS0095613Golden flower (tetraploid) 119.140
CNS0095614Golden flower (tetraploid) 220.016
CNS0095615Golden flower (tetraploid) 313.214
CRA001975CRR073297Stem 125.751
CRR073298Stem 226.252
CRR073299Stem 316.478
CRR073300Leaf 129.152
CRR073301Leaf 226.535
CRR073302Leaf 313.882
CRR073303Juvenile bud 127.299
CRR073304Juvenile bud 220.150
CRR073305Juvenile bud 320.669
CRR073306Third green 15.077
CRR073307Third green 24.202
CRR073308Third green 36.097
CRR073309Second white 14.356
CRR073310Second white 210.841
CRR073311Second white 36.112
CRR073312Silver flowering 14.131
CRR073313Silver flowering 24.205
CRR073314Silver flowering 35.875
CRR073315Gold flowering 110.313
CRR073316Gold flowering 211.269
CRR073317Gold flowering 31.613
CRR073318Tawny withering 122.261
CRR073319Tawny withering 231.459
CRR073320Tawny withering 321.092