Detail information of GWHGAAZE032887


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276349.22.80559E-58PREDICTED: uncharacterized protein LOC100242725 [Vitis vinifera]
COGYP_003545228.10.0000004ribosomal protein L25
trEMBLtr|D7SPM3|D7SPM3_VITVI1E-58Putative uncharacterized protein {ECO:0000313|EMBL:CBI17602.3}
TAIR10AT4G23620.11E-35Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000056gene253334255440-
GWHAAZE00000056mRNA253334255440-
GWHAAZE00000056exon255229255440-
GWHAAZE00000056exon255028255103-
GWHAAZE00000056exon253844253973-
GWHAAZE00000056exon253334253341-
GWHAAZE00000056CDS255229255440-
GWHAAZE00000056CDS255028255103-
GWHAAZE00000056CDS253844253973-
GWHAAZE00000056CDS253334253341-
Transcript Sequence

Network for GWHGAAZE032887

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02897RP-L25, rplY Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.580
SRR3591706second leaf6.828
SRR3591707mature leaf9.381
SRR3591708Shoot apex16.021
SRR3591709Stem10.371
SRR3591710White floral bud10.688
SRR3591711White flower12.700
SRR3591712Green floral bud17.474
SRR3591713Yellow flower11.176
SRP173429 SRR8316895Juvenile bud stage 6.924
SRR8316896Juvenile bud stage 12.135
SRR8316897Juvenile bud stage 5.016
SRR8316894Third green stage 4.155
SRR8316900Third green stage 12.837
SRR8316901Third green stage 9.492
SRR8316898Complete white stage 1.973
SRR8316899Complete white stage 8.419
SRR8316903Complete white stage 2.555
SRR8316902Silver flowering stage2.593
SRR8316904Silver flowering stage2.560
SRR8316905Silver flowering stage1.690
SRR8316906Gold flowering stage 4.524
SRR8316907Gold flowering stage 4.282
SRR8316908Gold flowering stage 3.058
SRP132670SRR6706286Control8.867
SRR6706287Light intensity 50%7.991
SRR6706288Light intensity 20%7.449
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.265
CNS0095593Slightly white alabastrum(diploid) 26.066
CNS0095594Slightly white alabastrum(diploid) 36.696
CNS0095595Whole white alabastrum(diploid) 24.897
CNS0095596Whole white alabastrum(diploid) 35.017
CNS0095597Whole white alabastrum(diploid) 44.029
CNS0095598Silvery flower (diploied) 14.141
CNS0095599Silvery flower (diploied) 22.700
CNS0095600Silvery flower (diploied) 34.290
CNS0095601Golden flower (diploid) 12.124
CNS0095602Golden flower (diploid) 23.114
CNS0095603Golden flower (diploid) 32.711
CNS0095604Slightly white alabastrum(tetraploid) 19.051
CNS0095605Slightly white alabastrum(tetraploid) 26.360
CNS0095606Slightly white alabastrum(tetraploid) 39.917
CNS0095607Whole white alabastrum(tetraploid) 13.939
CNS0095608Whole white alabastrum(tetraploid) 25.402
CNS0095609Whole white alabastrum(tetraploid) 38.110
CNS0095610Silvery flower (tetraploid) 15.052
CNS0095611Silvery flower (tetraploid) 24.787
CNS0095612Silvery flower (tetraploid) 34.121
CNS0095613Golden flower (tetraploid) 12.105
CNS0095614Golden flower (tetraploid) 25.878
CNS0095615Golden flower (tetraploid) 32.127
CRA001975CRR073297Stem 16.749
CRR073298Stem 26.024
CRR073299Stem 39.004
CRR073300Leaf 17.764
CRR073301Leaf 24.842
CRR073302Leaf 36.268
CRR073303Juvenile bud 15.394
CRR073304Juvenile bud 26.503
CRR073305Juvenile bud 37.810
CRR073306Third green 11.999
CRR073307Third green 21.496
CRR073308Third green 31.744
CRR073309Second white 13.825
CRR073310Second white 23.963
CRR073311Second white 33.091
CRR073312Silver flowering 11.366
CRR073313Silver flowering 22.304
CRR073314Silver flowering 33.176
CRR073315Gold flowering 14.121
CRR073316Gold flowering 24.871
CRR073317Gold flowering 35.925
CRR073318Tawny withering 16.920
CRR073319Tawny withering 24.369
CRR073320Tawny withering 38.040