Gene detail

Detail information of GWHGAAZE032888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011021168.1	0	PREDICTED: tryptophan synthase beta chain 1 [Populus euphratica]
COG	YP_005535112.1	0	tryptophan synthase subunit beta
Swissprot	tr\|P25269\|TRBP2_ARATH	5E-18	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|U5FMX8\|U5FMX8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51286.1}
TAIR10	AT5G38530.1	0	tryptophan synthase beta type 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000056	gene	277693	280707	+
GWHAAZE00000056	mRNA	277693	280707	+
GWHAAZE00000056	exon	277693	277716	+
GWHAAZE00000056	exon	277807	278141	+
GWHAAZE00000056	exon	278235	278385	+
GWHAAZE00000056	exon	279136	279673	+
GWHAAZE00000056	exon	279755	279853	+
GWHAAZE00000056	exon	280445	280707	+
GWHAAZE00000056	CDS	277693	277716	+
GWHAAZE00000056	CDS	277807	278141	+
GWHAAZE00000056	CDS	278235	278385	+
GWHAAZE00000056	CDS	279136	279673	+
GWHAAZE00000056	CDS	279755	279853	+
GWHAAZE00000056	CDS	280445	280707	+

Transcript Sequence
>GWHTAAZE032927 ATGAAGTACATAGTTGCAAAATATGCTGACGAGCAATGGCTTGGTTGCTATGAATGGAAAACAAAGCCTAGCTACCTGAAACTTCCTTATGGCTCTAGAACAAGGACAGTAGTAGCTCTTAGCGCCAACTCTAACTCAACTGCACTACCTCGTCAATGGTACAATCTAATAGCAGATCTTCCAATCAAACCTCCTCCATCTTTGCATCCAAAGACTCAAAAACCAGTCAAACCCGAGGATTTATCTCCTCTTTTTCCTGATGAGTTAATTAAGCAAGAGGCTAGCAATGAACGCTTCATTGATATCCCAGAAGAGGTTCTAGATGTTTACAGTCTTTGGCGCCCAACCCCTCTGATCAGAGCCAAGAGGTTGGAGAAACTACTCAATACACCTGCAAGGATATACTACAAGTACGAAGGTGTAAGCCCAGCTGGCTCCCACAAGCCCAACACTGCTGTCCCTCAGGTCTGGTATAATGCACAAGAAGGTGTCAAGAATGTCGTGAAACTGGTATGGCAAGTCCGGGCATCTTATGATCAGAAACCATATCGTAGAATGATGATGGAAACCTGGGGTGCCAAAGTTTACCCTTCTCCTTCTTCTGTTACTGAGTCGGGCCGGAGAATTCTTCAAATGGATCCATCAAGCCCAGGAAGTTTAGGAATTGCTATATCCGAGGCTGTGGAGGTTGCTGCCTCAAATGCCGATACCAAATACTGTCTAGGGAGTGTTCTTAACCATGTTTTGTTACATCAGACTATCATAGGAGAAGAGTGTATAAAGCAGATGGAACTCATAGGGGAGACTCCTGATGTGATAATTGGATGTACTGGGGGCGGGTCAAATTTTGGCGGGCTTGCTTTTCCATTTATTCGAGAAAAGCTTAATGGGAAAATTAATCCTCTCATAAGGGCGGTTGAACCTACAGCTTGCCCTTCGTTAACTAAAGGTGTATACAAGTATGATTATGGAGATACTGCAGGGATGACGCCTTTGATGAAAATGCATACACTTGGGCATGACTTCATTCCTGACCCAATTCATGCTGGGGGTTTGCGTTACCATGGCATGTCGCCGTTGATTTCACATATTTACGAATTGGGTTTCATGGAAGCATTGGCAATTCCTCAGATTGAATGTTTTCGAGGTGCCATACAATTTGCAAGGTCCGAGGGACTAATACCAGCACCAGAACCAACTCATGCCATAGCTGCCACCATTAGGGAAGCTCTCCACTGCAAAGAAACCGGAGAATCAAAAGTTATACTAATGGCAATGTGTGGCCATGGCCATTTCGACCTACCAGCTTACGAGAAGTATTTGCAGGGAAATATGGTCGATTTGTCATTCTCAGAGGCAAAGATGCAATCATCAATGGCCAATATTCCCCAAATGGTACCTTCCGAGTGA

Network for GWHGAAZE032888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	179	428	4.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06001	trpB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0006568	biological_process	tryptophan metabolic process
GO:0004834	molecular_function	tryptophan synthase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.585
	SRR3591706	second leaf	9.080
	SRR3591707	mature leaf	9.446
	SRR3591708	Shoot apex	6.727
	SRR3591709	Stem	4.478
	SRR3591710	White floral bud	21.707
	SRR3591711	White flower	27.726
	SRR3591712	Green floral bud	14.180
	SRR3591713	Yellow flower	21.788
SRP173429	SRR8316895	Juvenile bud stage	8.421
	SRR8316896	Juvenile bud stage	7.054
	SRR8316897	Juvenile bud stage	4.540
	SRR8316894	Third green stage	4.145
	SRR8316900	Third green stage	16.991
	SRR8316901	Third green stage	15.631
	SRR8316898	Complete white stage	5.719
	SRR8316899	Complete white stage	15.559
	SRR8316903	Complete white stage	9.082
	SRR8316902	Silver flowering stage	4.920
	SRR8316904	Silver flowering stage	4.779
	SRR8316905	Silver flowering stage	2.173
	SRR8316906	Gold flowering stage	7.331
	SRR8316907	Gold flowering stage	8.079
	SRR8316908	Gold flowering stage	12.726
SRP132670	SRR6706286	Control	11.969
	SRR6706287	Light intensity 50%	14.519
	SRR6706288	Light intensity 20%	14.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.733
	CNS0095593	Slightly white alabastrum(diploid) 2	9.817
	CNS0095594	Slightly white alabastrum(diploid) 3	11.115
	CNS0095595	Whole white alabastrum(diploid) 2	14.809
	CNS0095596	Whole white alabastrum(diploid) 3	9.203
	CNS0095597	Whole white alabastrum(diploid) 4	7.837
	CNS0095598	Silvery flower (diploied) 1	20.111
	CNS0095599	Silvery flower (diploied) 2	18.773
	CNS0095600	Silvery flower (diploied) 3	18.155
	CNS0095601	Golden flower (diploid) 1	10.238
	CNS0095602	Golden flower (diploid) 2	19.155
	CNS0095603	Golden flower (diploid) 3	16.963
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.168
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.941
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.219
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.086
	CNS0095610	Silvery flower (tetraploid) 1	19.425
	CNS0095611	Silvery flower (tetraploid) 2	19.715
	CNS0095612	Silvery flower (tetraploid) 3	25.558
	CNS0095613	Golden flower (tetraploid) 1	12.388
	CNS0095614	Golden flower (tetraploid) 2	19.172
	CNS0095615	Golden flower (tetraploid) 3	4.446
CRA001975	CRR073297	Stem 1	9.185
	CRR073298	Stem 2	8.263
	CRR073299	Stem 3	7.105
	CRR073300	Leaf 1	11.704
	CRR073301	Leaf 2	12.496
	CRR073302	Leaf 3	12.333
	CRR073303	Juvenile bud 1	12.445
	CRR073304	Juvenile bud 2	20.769
	CRR073305	Juvenile bud 3	16.996
	CRR073306	Third green 1	8.864
	CRR073307	Third green 2	5.151
	CRR073308	Third green 3	7.672
	CRR073309	Second white 1	9.459
	CRR073310	Second white 2	4.591
	CRR073311	Second white 3	2.712
	CRR073312	Silver flowering 1	3.907
	CRR073313	Silver flowering 2	4.840
	CRR073314	Silver flowering 3	4.687
	CRR073315	Gold flowering 1	6.823
	CRR073316	Gold flowering 2	5.589
	CRR073317	Gold flowering 3	7.682
	CRR073318	Tawny withering 1	6.049
	CRR073319	Tawny withering 2	5.980
	CRR073320	Tawny withering 3	3.787