Gene detail

Detail information of GWHGAAZE032894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009796451.1	0	PREDICTED: F-box protein At1g67340 [Nicotiana sylvestris]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	3E-173	F-box protein At1g67340
trEMBL	tr\|K4BYQ8\|K4BYQ8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g015420.2.1}
TAIR10	AT1G67340.1	5E-123	HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000058	gene	198171	204149	+
GWHAAZE00000058	mRNA	198171	204149	+
GWHAAZE00000058	exon	198171	198325	+
GWHAAZE00000058	exon	198429	198591	+
GWHAAZE00000058	exon	198671	199332	+
GWHAAZE00000058	exon	204077	204149	+
GWHAAZE00000058	CDS	198171	198325	+
GWHAAZE00000058	CDS	198429	198591	+
GWHAAZE00000058	CDS	198671	199332	+
GWHAAZE00000058	CDS	204077	204149	+

Transcript Sequence
>GWHTAAZE032933 ATGCATAACCGGAAACGCTTTAAGTCCTCGCCGGAGACAGCCTCCGGTGGTACTGATTTCTTTGATTCTTTGCCTGATGATCTCCTACTTTCTGTTCTCTGCAAACTCAGCTCCACCGCCGCCTCTCCTTCAGATTTCATCAGCGTTTTGATGACGTGCAGAAGACTAAACGGATTAGGCCTCAACTCACTTGTATTATCCAAAGCTTCTCCAAAAACTTTTGCTATAAGACCAACCAATTGGTCTGAGTCCGCTCACCGATTCTTAAAGCAGTGCGCCGATGCCGGAAATATTGAAGCTTGCTACACTCTTGGCATGATTCGCTTCTACTGTTTGCACAATCGAGGCAGCGGAGCCTCTCTGATGGCCAAGGCAGCGATGACATCTCACGCGCCGGCACTCTACTCGCTGGCCGTTATTCAGTTCAACGGCAGCGGCGGCTCTAAAAACGACAAAGACCTCCGAGCCGGCGTGGCTCTTTGCGCCAGAGCCGCCTTCTTAGGCCACATAGACGCTCTTCGAGAGCTTGGGCACTGCCTTCAAGACGGCTACGGCGTTCGCCAAAACATCTCCGAGGGCCGCCGATTCCTTGTCCAAGCCAACGCCCGTGAATTAGCCGCCGTTCTATCAACAACGCCGTCGGCTCTTACCACCGGCTCGTGGCTGACGTGGAACCCGATTCCACACCACCGCCACGTGTTAGGCTCAGGATGTCCGTTACTCAGTGATTTCGGCTGCAATGTTCCGGCTCCAGAGGCTCACCCTGCCAGCCGTTTTTTGACCGACTGGTTCTCGGCTAAGGGTGGGGAGCCCGGTTCGGGGCTAAGGCTATGCTCTCATACGGGTTGTGGACGACCCGAGACTAGGAGGCACGAGTTTCGAAGGTGTTCGGTGTGTGGGGCAGTGAACTACTGCTCACGTGCTTGCCAGGCGCTTGATTGGAAGATGCGCCACAAGGCGGAGTGCGCACCGGTTGAGAGAATGTTGGTGAACTTGGATTGGCTCACTGATGCTCTAACCAAATATTGCAACGGTACAATTCTTAAAGCCTGA

Network for GWHGAAZE032894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.19	zf-MYND	283	322	8.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.149
	SRR3591706	second leaf	14.885
	SRR3591707	mature leaf	17.993
	SRR3591708	Shoot apex	12.085
	SRR3591709	Stem	20.411
	SRR3591710	White floral bud	6.601
	SRR3591711	White flower	10.335
	SRR3591712	Green floral bud	1.168
	SRR3591713	Yellow flower	3.292
SRP173429	SRR8316895	Juvenile bud stage	5.531
	SRR8316896	Juvenile bud stage	5.138
	SRR8316897	Juvenile bud stage	2.943
	SRR8316894	Third green stage	1.407
	SRR8316900	Third green stage	2.135
	SRR8316901	Third green stage	2.265
	SRR8316898	Complete white stage	0.549
	SRR8316899	Complete white stage	4.988
	SRR8316903	Complete white stage	0.570
	SRR8316902	Silver flowering stage	0.824
	SRR8316904	Silver flowering stage	0.625
	SRR8316905	Silver flowering stage	0.333
	SRR8316906	Gold flowering stage	1.893
	SRR8316907	Gold flowering stage	2.518
	SRR8316908	Gold flowering stage	1.565
SRP132670	SRR6706286	Control	1.609
	SRR6706287	Light intensity 50%	1.132
	SRR6706288	Light intensity 20%	0.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.579
	CNS0095593	Slightly white alabastrum(diploid) 2	5.961
	CNS0095594	Slightly white alabastrum(diploid) 3	4.346
	CNS0095595	Whole white alabastrum(diploid) 2	4.300
	CNS0095596	Whole white alabastrum(diploid) 3	0.335
	CNS0095597	Whole white alabastrum(diploid) 4	4.721
	CNS0095598	Silvery flower (diploied) 1	22.755
	CNS0095599	Silvery flower (diploied) 2	21.922
	CNS0095600	Silvery flower (diploied) 3	7.567
	CNS0095601	Golden flower (diploid) 1	19.685
	CNS0095602	Golden flower (diploid) 2	12.980
	CNS0095603	Golden flower (diploid) 3	12.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.192
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.035
	CNS0095610	Silvery flower (tetraploid) 1	0.728
	CNS0095611	Silvery flower (tetraploid) 2	1.209
	CNS0095612	Silvery flower (tetraploid) 3	2.062
	CNS0095613	Golden flower (tetraploid) 1	0.873
	CNS0095614	Golden flower (tetraploid) 2	1.374
	CNS0095615	Golden flower (tetraploid) 3	0.907
CRA001975	CRR073297	Stem 1	3.863
	CRR073298	Stem 2	4.115
	CRR073299	Stem 3	4.849
	CRR073300	Leaf 1	3.395
	CRR073301	Leaf 2	5.395
	CRR073302	Leaf 3	1.861
	CRR073303	Juvenile bud 1	0.619
	CRR073304	Juvenile bud 2	1.195
	CRR073305	Juvenile bud 3	3.905
	CRR073306	Third green 1	6.250
	CRR073307	Third green 2	3.687
	CRR073308	Third green 3	3.136
	CRR073309	Second white 1	5.665
	CRR073310	Second white 2	6.900
	CRR073311	Second white 3	6.974
	CRR073312	Silver flowering 1	12.806
	CRR073313	Silver flowering 2	11.067
	CRR073314	Silver flowering 3	9.352
	CRR073315	Gold flowering 1	22.476
	CRR073316	Gold flowering 2	24.829
	CRR073317	Gold flowering 3	25.636
	CRR073318	Tawny withering 1	15.098
	CRR073319	Tawny withering 2	23.482
	CRR073320	Tawny withering 3	22.022